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Schema
Citing CMDGA
Clear Filters
Annotation type
3
accessible chromatin
1
gene expression
1
target gene predictions
1
variant allelic effects
Annotation Category
3
cis-regulatory elements
1
Gene expression levels
1
Genetic variant effects
1
Target gene links
Annotation type Category
ChIP-seq
64
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
RNA-seq
Available data
5
bed bed3+
1
bigWig
1
tsv
File set status
6
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
6
Homo sapiens
Biosample type
4
tissue
2
cell line
Biosample term
52
HeLa-S3
47
H1-hESC
39
monocyte
37
endothelial cell
30
islet of Langerhans
26
fibroblast
25
hepatocyte
25
retina
23
macrophage
21
EndoC_BH1
21
pancreatic ductal cell
20
pigmented layer of retina
20
smooth muscle cell
19
HFFc6
19
kidney
19
pericyte cell
18
K562
18
epithelial cell of proximal tubule
18
neural progenitor cell
18
pancreatic beta cell
17
glomerular endothelial cell
17
induced pluripotent stem cell
17
pancreatic acinar cell
17
pancreatic alpha cell
17
subcutaneous adipose tissue
16
liver
16
pancreatic delta cell
15
CD14-positive monocyte
14
excitatory neuron
13
CD8-positive, alpha-beta T cell
13
adipocyte
13
regulatory T cell
12
B cell
12
astrocyte
12
coronary artery
11
adipose tissue
11
cardiomyocytes
11
heart
11
right atrium auricular region
10
T-helper 1 cell
10
endothelial cell of hepatic sinusoid
10
pancreatic stellate cell
10
pituitary stalk
10
tibial artery
10
tibial nerve
9
T cell
9
T-helper 17 cell
9
extended pluripotent stem (EPS) cells
9
frontal cortex
9
glomerular visceral epithelial cell
9
memory B cell
9
omental fat pad
9
pancreas
9
progenitor cell of endocrine pancreas
9
retinal pigment epithelial cell
9
skeletal muscle fiber
8
Ammon's horn
8
GM12878
8
body of pancreas
8
cardiomyocytes (cardiac muscle cell)
8
caudate nucleus
8
embryonic stem cell
8
glutamatergic neuron
8
heart left ventricle
8
naive thymus-derived CD8-positive, alpha-beta T cell
8
natural killer cell
8
osteoblast
8
putamen
8
skeletal muscle satellite cell
7
H9
7
ascending aorta
7
cerebellum
7
dendritic cell
7
erythroblast
7
kidney interstitial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
mesangial cell
7
mesenchymal stem cell
7
naive thymus-derived CD4-positive, alpha-beta T cell
6
CD4-positive helper T cell
6
SGBS preadipocytes
6
cardiac precursors (cardiac muscle cell)
6
cerebellum (Hemisphere)
6
colon epithelial cell
6
cortical cell of adrenal gland
6
enterocyte
6
gamma-delta T cell
6
keratinocyte
6
lymphocyte
6
naive B cell
6
olfactory receptor cell
6
pancreatic polypeptide-secreting cell
6
stomach
6
type I muscle cell
6
type II muscle cell
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
HUES8
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
T-helper 2 cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
adrenal gland
5
amygdala
5
anterior cingulate cortex
5
basal cell
5
cardiac muscle cell
5
central memory CD8-positive, alpha-beta T cell
5
chondrocyte
5
effector memory CD8-positive, alpha-beta T cell
5
endothelial cell of umbilical vein
5
fibroblast of cardiac tissue
5
gabaergic neuron
5
gastrocnemius medialis(Muscle - Skeletal)
5
heart right ventricle
5
hepatic stellate cell
5
hypothalamus
5
inhibitory neuron
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
left ventricle myocardium
5
nucleus accumbens
5
pancreatic endothelial cell
5
psoas muscle
5
right lobe of liver
5
skeletal muscle myoblast
5
smooth muscle cell of the coronary artery
5
spleen
5
substantia nigra
5
type II pneumocyte
4
CD4-positive, alpha-beta T cell
4
CyT49
4
HepG2
4
Pancreatic progenitors (progenitor cell of endocrine pancreas)
4
Schwann cell
4
T follicular helper cell
4
adult endothelial progenitor cell
4
blood vessel smooth muscle cell
4
bone tissue
4
brain
4
cartilage tissue
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
endothelial cell of lymphatic vessel
4
enteric smooth muscle cell
4
iPSC derived cell line
Organ
4
brain
2
mammary gland
Life stage
2
fetal
Date released
2
June, 2020
1
February, 2020
1
January, 2020
1
May, 2020
1
May, 2021
Software used
3
macs
qTLtools
1
abc
1
deltasvm
1
r
Lab
5
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
6
AMP
RFA
6
AMP
annotation_type_category!
ChIP-seq
software_used.software.name!
qTLtools
Showing 6 of 6 results
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Download
FileSet
DSR249DLQ
released
Annotation file set
: enhancer-gene predicton of MCF-7-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR147QJJ
released
Annotation file set
: Accessible chromatin annotation for Neural Fetal brain from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR645VUL
released
Annotation file set
: Accessible chromatin annotation for Breast MCF-7 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR154FEP
released
Annotation file set
: Genetic variants with deltaSVM predictions in brain DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR267EUN
released
Annotation file set
: Gene expression levels of Brain fetal from RNA-seq (GSE63634)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR271FEH
released
Annotation file set
: Accessible chromatin annotation of brain fetal from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP