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Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
2
accessible chromatin
1
chromatin state
1
variant allelic effects
Annotation Category
3
Target gene links
3
cis-regulatory elements
1
Genetic variant effects
Annotation type Category
3
ATAC-seq
3
snATAC-seq
1
ChIP-seq
1
DNase-seq
1
H3K27ac ChIP-Seq
Available data
7
bed bed3+
2
bigWig
File set status
7
released
Genome assembly (visualization)
7
hg19
4
GRCh38
Organism
7
Homo sapiens
Biosample type
7
primary cell
Biosample term
30
endothelial cell
26
fibroblast
19
macrophage
19
pericyte cell
19
smooth muscle cell
16
endothelial cell of hepatic sinusoid
15
CD14-positive monocyte
15
kidney
14
hepatocyte
14
pancreatic acinar cell
14
pancreatic ductal cell
13
pancreatic alpha cell
13
pancreatic beta cell
13
pancreatic delta cell
12
adipocyte
12
excitatory neuron
10
astrocyte
10
pituitary stalk
9
pancreatic stellate cell
9
skeletal muscle fiber
8
T cell
8
induced pluripotent stem cell
7
CD8-positive, alpha-beta T cell
7
dendritic cell
7
keratinocyte
7
type II pneumocyte
6
colon epithelial cell
6
cortical cell of adrenal gland
6
enterocyte
6
erythroblast
6
skeletal muscle satellite cell
6
type I muscle cell
6
type II muscle cell
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
B cell
5
CD4-positive helper T cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
basal cell
5
inhibitory neuron
5
left cardiac atrium
5
mesenchymal stem cell
5
natural killer cell
5
pancreatic endothelial cell
4
blood vessel smooth muscle cell
4
cartilage tissue
4
endothelial cell of lymphatic vessel
4
enteric smooth muscle cell
4
gabaergic neuron
4
glutamatergic neuron
4
islet of Langerhans
4
liver
4
luminal epithelial cell of mammary gland
4
memory B cell
4
mesothelial cell
4
myofibroblast cell
4
pancreatic A cell
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
pancreatic polypeptide-secreting cell
4
smooth muscle cell of the esophagus
4
type B pancreatic cell
4
type I pneumocyte
3
Cycling Mononuclear Phagocyte
3
Mast Cell
3
Schwann cell
3
ciliated cell
3
club cell
3
endocardial cell
3
enteric neuron
3
fibroblast of cardiac tissue
3
glial cell
3
goblet cell
3
mammary gland epithelial cell
3
mast cell
3
megakaryocyte
3
monocyte
3
oligodendrocyte precursor cell
3
pancreatic quiescent stellate cell
3
parietal cell
3
peptic cell
3
schwann cell
3
subcutaneous adipose tissue
3
thyroid follicular cell
2
BJAB cell
2
CD4-positive, alpha-beta T cell
2
ESC derived cell line
2
EndoC_BH1
2
GM12878
2
H1-hESC
2
HepG2
2
Jurkat
2
K562
2
MCF 10A cell
2
Muller cell
2
T-cell
2
THP-1
2
U937
2
activated CD4-positive, alpha-beta T cell
2
activated CD8-positive, alpha-beta T cell
2
adrenal gland
2
alveolar macrophage
2
basal cell of epidermis
2
capillary endothelial cell
2
cardiac endothelial cell
2
cardiac muscle cell
2
colon goblet cell
2
conventional dendritic cell
2
eccrine cell
2
endothelial cell of umbilical vein
2
enterochromaffin-like cell
2
enterocyte of epithelium of small intestine
2
epithelial cell of esophagus
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
fibroblast of lung
2
foveolar cell of stomach
2
granular cell of epidermis
2
intestinal tuft cell
2
kidney distal convoluted tubule epithelial cell
2
leukocyte
2
luteal cell
2
mammary epithelial cell
2
mature NK T cell
2
melanocyte
2
mesangial cell
2
microglial cell
2
myoepithelial cell
2
naive B cell
2
naive t cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
natural killer cell mediated cytotoxicity
2
neural cell
2
non keratinizing barrier epithelial cell
2
non-classical monocyte
2
oligodendrocyte
2
paneth cell
2
plasma cell
2
plasmacytoid dendritic cell
2
regular atrial cardiac myocyte
2
regulatory T cell
2
renal principal cell
2
respiratory goblet cell
Organ
7
epithelium
7
skin of body
Date released
4
November, 2021
1
August, 2017
1
February, 2024
1
May, 2021
Software used
3
abc
2
macs
1
chromhmm
1
deltasvm
Lab
AMP-T2D consortium
5
Bing Ren, UCSD
1
Jesse Engreitz, Stanford University
1
Stephen Parker, UMich
Project
4
ENCODE
3
AMP
RFA
4
ENCODE3
3
AMP
lab.title!
AMP-T2D consortium
Showing 7 of 7 results
table-tab-icon
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Download
FileSet
DSR681TKD
released
Annotation file set
: Target gene predictions of Keratinocyte 2 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR385FIQ
released
Annotation file set
: Target gene predictions of Keratinocyte 1 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR919NQU
released
Annotation file set
: Accessible chromatin annotation of Keratinocyte 2 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR774OBV
released
Annotation file set
: Accessible chromatin annotation of Keratinocyte 1 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR926EGV
released
Annotation file set
: enhancer-gene predicton of keratinocyte-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR684JHV
released
Annotation file set
: Variant allelic effects annotation of Keratinocytes from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
TSTSR926942
released
Annotation file set
: ChromHMM 13-state model for NHEK
Lab:
Stephen Parker, UMich
Project:
AMP