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Schema
Citing CMDGA
Clear Filters
Annotation type
4
candidate regulatory elements
3
target gene predictions
Annotation Category
4
cis-regulatory elements
3
Target gene links
Annotation type Category
7
DNase-seq
6
ChIP-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
7
bed bed3+
File set status
7
released
Genome assembly (visualization)
7
hg19
Organism
7
Homo sapiens
Biosample type
tissue
7
cell line
Biosample term
131
monocyte
60
HeLa-S3
51
H1-hESC
50
CD8-positive, alpha-beta T cell
47
neural progenitor cell
43
A549
41
common myeloid progenitor, CD34-positive
40
endothelial cell
36
B cell
35
hepatocyte
33
K562
33
hematopoietic multipotent progenitor cell
32
macrophage
31
fibroblast
27
CD14-positive monocyte
25
regulatory T cell
24
smooth muscle cell
23
CD4-positive, alpha-beta memory T cell
23
EndoC_BH1
23
pancreatic ductal cell
21
epithelial cell of proximal tubule
21
pericyte cell
20
MCF-7
20
adipocyte
20
breast cancer cell
20
glomerular endothelial cell
20
natural killer cell
19
HFFc6
19
T-helper 1 cell
18
T cell
18
T-helper 17 cell
18
foreskin keratinocyte
18
pancreatic beta cell
17
keratinocyte
17
pancreatic alpha cell
17
trophoblast cell
16
astrocyte
16
endothelial cell of hepatic sinusoid
16
induced pluripotent stem cell
16
pancreatic acinar cell
15
CD8-positive, alpha-beta memory T cell
15
H9
15
cardiac muscle cell
15
foreskin fibroblast
15
mesenchymal stem cell
15
pancreatic delta cell
14
HepG2
14
mononuclear cell
14
osteoblast
14
retinal pigment epithelial cell
13
GM12878
13
T-helper 2 cell
13
endothelial cell of umbilical vein
13
excitatory neuron
13
fibroblast of cardiac tissue
13
neutrophil
12
CD4-positive, alpha-beta T cell
12
embryonic stem cell
12
lymphoblastoid cell line
12
naive thymus-derived CD4-positive, alpha-beta T cell
12
neuroblastoma cell
11
mammary epithelial cell
11
mammary gland epithelial cell
11
skeletal muscle myoblast
10
Rhabdomyosarcoma
10
bronchial epithelial cell
10
gastric cancer cell
10
glomerular visceral epithelial cell
10
neuronal stem cell
10
progenitor cell of endocrine pancreas
10
skeletal muscle satellite cell
9
cardiomyocytes
9
diffuse intrinsic pontine glioma
9
epithelial cell of prostate
9
fibroblast of lung
9
liposarcoma
9
lymphocyte
9
neurosphere
9
skin fibroblast
8
22Rv1
8
B-lymphoblastoid cell line
8
fibroblast cell line
8
hepatic stellate cell
8
pituitary stalk
8
skeletal muscle fiber
7
CD4-positive helper T cell
7
HAP-1
7
HEK293
7
HT-29
7
IMR-90
7
Jurkat
7
cardiomyocytes (cardiac muscle cell)
7
choroid plexus epithelial cell
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
fibroblast of dermis
7
kidney tubule cell
7
memory B cell
7
mesendoderm
6
CD1c-positive myeloid dendritic cell
6
CMK
6
Chondroid Chordoma
6
GM06990
6
GM12864
6
GM12865
6
GM19240
6
GM23248
6
HL-60
6
HUES8
6
LNCAP
6
LoVo cell
6
MG63
6
MM.1S
6
NAMALWA cell
6
cardiac precursors (cardiac muscle cell)
6
chondrocyte
6
colon epithelial cell
6
endometrium adenocarcinoma
6
erythroblast
6
fibroblast of pulmonary artery
6
hESC cell
6
iPSC derived cell line
6
immortal human breast epithelial cell line cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
neuroblastoma cell line
6
pancreatic stellate cell
6
plasma cell
6
renal cortical epithelial cell
6
smooth muscle cell of the coronary artery
6
type I muscle cell
5
cardiac fibroblast
5
AG04449 cell
5
AG04450 cell
5
AG09309 cell
5
AG09319 cell
5
AG10803 cell
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
BE(2)-C
5
BJ cell
5
Caco-2 cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
CyT49
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Daoy
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Ewing sarcoma
5
Fibroblast
5
GM10248
5
GM10266
5
GM12875
5
GM18507
5
GM19238
5
GM19239
5
Glomerular Capillary Endothelial Cell
5
H7-hESC
5
HCT116
5
HUES6
5
HuH-7
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
KARPAS-422 cell
5
LHCN-M2
5
Lymphatic Endothelial Cell
5
Medullary Thick Ascending Limb Cell
5
Non-Classical Monocyte
5
OCI-LY7
5
PC-9
5
SGBS preadipocytes
5
SJSA1
5
SK-N-DZ
5
SW480
5
WI38
5
acute myeloid leukemia
5
dermis blood vessel endothelial cell
5
endodermal cell
5
enterocyte
5
foreskin melanocyte
Disease term
4
neuroblastoma
Organ
7
brain
Life stage
4
child
2
young adult
Date released
4
September, 2022
2
February, 2021
1
May, 2021
Software used
4
r
chromhmm
2
encode-ccres
1
abc
Lab
6
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
7
AMP
RFA
7
AMP
biosample_type!
tissue
software_used.software.name!
chromhmm
Showing 7 of 7 results
table-tab-icon
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Download
FileSet
DSR277GGH
released
Annotation file set
: Candidate regulatory elements for BSS01571 SK-N-SH from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR410LTV
released
Annotation file set
: Candidate regulatory elements for BSS01562 SK-N-SH from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR237PDC
released
Annotation file set
: Target gene predictions for BSS01571 SK-N-SH from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR022HYM
released
Annotation file set
: Target gene predictions for BSS01562 SK-N-SH from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR955YDG
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE SK-N-SH
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR096VBD
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE SK-N-SH
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR266GVV
released
Annotation file set
: enhancer-gene predicton of SK-N-SH-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP