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Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
2
candidate regulatory elements
2
chromatin state
1
binding sites
Annotation Category
5
cis-regulatory elements
3
Target gene links
Annotation type Category
7
ChIP-seq
5
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
6
bed bed3+
2
bed bed9
File set status
8
released
Genome assembly (visualization)
8
hg19
2
GRCh38
Organism
8
Homo sapiens
Biosample type
tissue
8
cell line
Biosample term
131
monocyte
62
HeLa-S3
59
A549
54
H1-hESC
50
neural progenitor cell
44
CD8-positive, alpha-beta T cell
40
K562
40
common myeloid progenitor, CD34-positive
40
endothelial cell
38
B cell
36
hepatocyte
34
hematopoietic multipotent progenitor cell
32
fibroblast
32
macrophage
27
CD14-positive monocyte
27
CD4-positive, alpha-beta memory T cell
26
regulatory T cell
25
adipocyte
24
smooth muscle cell
23
EndoC_BH1
23
pancreatic ductal cell
22
MCF-7
22
T cell
22
epithelial cell of proximal tubule
22
pericyte cell
21
CD8-positive, alpha-beta memory T cell
20
T-helper 1 cell
20
breast cancer cell
20
glomerular endothelial cell
20
keratinocyte
20
natural killer cell
19
HFFc6
19
mononuclear cell
19
trophoblast cell
18
T-helper 17 cell
18
embryonic stem cell
18
pancreatic beta cell
17
mesenchymal stem cell
17
pancreatic alpha cell
16
HepG2
16
astrocyte
16
endothelial cell of hepatic sinusoid
16
fibroblast of cardiac tissue
16
induced pluripotent stem cell
16
osteoblast
16
pancreatic acinar cell
15
GM12878
15
endothelial cell of umbilical vein
15
mammary gland epithelial cell
15
pancreatic delta cell
15
retinal pigment epithelial cell
14
T-helper 2 cell
14
foreskin keratinocyte
14
skeletal muscle myoblast
13
excitatory neuron
13
fibroblast of lung
13
foreskin fibroblast
13
neutrophil
12
cardiac muscle cell
12
lymphoblastoid cell line
12
neuroblastoma cell
12
skeletal muscle satellite cell
11
bronchial epithelial cell
11
erythroblast
11
fibroblast of dermis
11
glomerular visceral epithelial cell
10
H9
10
Rhabdomyosarcoma
10
gastric cancer cell
10
hepatic stellate cell
10
lymphocyte
10
progenitor cell of endocrine pancreas
10
skin fibroblast
9
cardiomyocytes
9
diffuse intrinsic pontine glioma
9
kidney tubule cell
9
liposarcoma
8
22Rv1
8
B-lymphoblastoid cell line
8
GM19240
8
IMR-90
8
NAMALWA cell
8
choroid plexus epithelial cell
8
colon epithelial cell
8
fibroblast cell line
8
immortal human breast epithelial cell line cell
8
mammary epithelial cell
8
naive T cell
8
pituitary stalk
8
skeletal muscle fiber
7
AG04449 cell
7
AG04450 cell
7
AG09309 cell
7
AG09319 cell
7
AG10803 cell
7
BE(2)-C
7
BJ cell
7
CD4-positive helper T cell
7
CD4-positive, alpha-beta T cell
7
Caco-2 cell
7
GM06990
7
GM12864
7
GM12865
7
GM19238
7
GM19239
7
HAP-1
7
HEK293
7
HL-60
7
HT-29
7
Jurkat
7
KARPAS-422 cell
7
LoVo cell
7
SK-N-SH
7
WERI-Rb-1
7
cardiomyocytes (cardiac muscle cell)
7
dermis lymphatic vessel endothelial cell
7
endometrium adenocarcinoma
7
epithelial cell of prostate
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
mature neutrophil
7
memory B cell
7
mesendoderm
7
naive thymus-derived CD4-positive, alpha-beta T cell
7
neuronal stem cell
6
CD1c-positive myeloid dendritic cell
6
CMK
6
Chondroid Chordoma
6
GM12875
6
GM12891
6
GM12892
6
GM18507
6
GM23248
6
H7-hESC
6
HUES8
6
HuH-7
6
LHCN-M2
6
LNCaP clone FGC
6
MG63
6
MM.1S
6
OCI-LY7
6
SK-N-DZ
6
T47D
6
cardiac precursors (cardiac muscle cell)
6
chondrocyte
6
endodermal cell
6
fibroblast of villous mesenchyme
6
hESC cell
6
iPSC derived cell line
6
kidney glomerular epithelial cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
neuroblastoma cell line
6
neurosphere
6
pancreatic stellate cell
6
plasma cell
6
smooth muscle cell of the coronary artery
6
type I muscle cell
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
CD14-positive, CD16-negative classical monocyte
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
CyT49
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Daoy
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Ewing sarcoma
5
Fibroblast
5
GM08714
5
GM10248
5
GM10266
5
Glomerular Capillary Endothelial Cell
5
HCT-116 cell
5
HCT116
5
HK-2 cell
5
KBM-7
5
Lymphatic Endothelial Cell
5
Non-Classical Monocyte
Disease term
6
neuroblastoma
Organ
8
brain
Life stage
6
child
Date released
6
September, 2022
1
May, 2021
1
October, 2022
Software used
4
r
3
chromhmm
encode-ccres
1
abc
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
biosample_type!
tissue
software_used.software.name!
encode-ccres
Showing 8 of 8 results
table-tab-icon
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Download
FileSet
DSR744HBG
released
Annotation file set
: Binding sites annotation for SK-N-SH (SK-N-SH) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR277GGH
released
Annotation file set
: Candidate regulatory elements for BSS01571 SK-N-SH from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR410LTV
released
Annotation file set
: Candidate regulatory elements for BSS01562 SK-N-SH from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR237PDC
released
Annotation file set
: Target gene predictions for BSS01571 SK-N-SH from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR022HYM
released
Annotation file set
: Target gene predictions for BSS01562 SK-N-SH from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR392IHQ
released
Annotation file set
: Chromatin states for BSS01571 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR829TQG
released
Annotation file set
: Chromatin states for BSS01562 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR266GVV
released
Annotation file set
: enhancer-gene predicton of SK-N-SH-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP