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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
chromatin state
2
eQTL
1
gene expression
Annotation Category
2
Genetic variant effects
2
cis-regulatory elements
1
Gene expression levels
Annotation type Category
3
RNA-seq
2
ChIP-seq
Available data
bed bed3+
2
bed bed9
2
bigBed bed9
1
bigWig
1
tsv
File set status
5
released
Genome assembly (visualization)
4
GRCh38
2
hg19
Organism
5
Homo sapiens
Biosample type
5
tissue
Biosample term
28
islet of Langerhans
21
monocyte
18
A549
17
epithelial cell of proximal tubule
16
glomerular endothelial cell
16
induced pluripotent stem cell
15
liver
14
hepatocyte
14
subcutaneous adipose tissue
13
common myeloid progenitor, CD34-positive
12
adipose tissue
12
regulatory T cell
11
EndoC_BH1
11
T-helper 1 cell
11
T-helper 17 cell
11
cardiomyocytes
11
hematopoietic multipotent progenitor cell
11
tibial nerve
10
B cell
10
body of pancreas
10
caudate nucleus
10
endothelial cell
10
kidney
10
pancreatic ductal cell
9
CD4-positive, alpha-beta memory T cell
9
cerebellum
9
coronary artery
9
extended pluripotent stem (EPS) cells
9
frontal cortex
9
macrophage
9
omental fat pad
9
progenitor cell of endocrine pancreas
9
putamen
9
right atrium auricular region
9
substantia nigra
9
tibial artery
8
H1-hESC
8
adrenal gland
8
ascending aorta
8
heart left ventricle
8
neural progenitor cell
8
stomach
7
CD8-positive, alpha-beta memory T cell
7
T-helper 2 cell
7
embryonic stem cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
mature neutrophil
7
pancreatic acinar cell
7
spleen
6
Ammon's horn
6
K562
6
T cell
6
amygdala
6
anterior cingulate cortex
6
glomerular visceral epithelial cell
6
hypothalamus
6
kidney interstitial cell
6
lymphoblastoid cell line
6
mononuclear cell
6
natural killer cell
6
neutrophil
6
nucleus accumbens
6
pancreatic alpha cell
6
pancreatic beta cell
6
pancreatic delta cell
6
right lobe of liver
6
skeletal muscle tissue
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
CD14-positive, CD16-negative classical monocyte
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
MCF-7
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
alternatively activated macrophage
5
brain
5
cerebellum (Hemisphere)
5
endothelial cell of umbilical vein
5
gastrocnemius medialis(Muscle - Skeletal)
5
heart
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
left ventricle myocardium
5
mesangial cell
5
naive thymus-derived CD4-positive, alpha-beta T cell
5
ovary
5
pancreatic stellate cell
5
sigmoid colon
5
temporal lobe
5
thyroid gland
5
transverse colon
4
CD14-positive monocyte
4
CD8-positive, alpha-beta T cell
4
adipocyte
4
angular gyrus
4
aorta
4
bone tissue
4
cardiomyocytes (cardiac muscle cell)
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
endocrine pancreas
4
endothelial cell of hepatic sinusoid
4
foreskin keratinocyte
4
gamma-delta T cell
4
gastrocnemius medialis
4
heart right ventricle
4
inflammatory macrophage
4
kidney connecting tubule epithelial cell
4
kidney distal convoluted tubule epithelial cell
4
layer of hippocampus
4
lung
4
naive thymus-derived CD8-positive, alpha-beta T cell
4
nephron progenitor
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic endothelial cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
psoas muscle
4
skeletal muscle myoblast
4
skeletal muscle satellite cell
4
small intestine
4
testis
4
vagina
4
visceral abdominal adipose tissue
3
CD4-positive, alpha-beta T cell
3
Cycling Mononuclear Phagocyte
3
HeLa-S3
3
Mast Cell
3
Peyer's patch
3
S-shaped body
3
T follicular helper cell
3
adult endothelial progenitor cell
3
blood cell
3
cartilage tissue
3
central memory CD8-positive, alpha-beta T cell
3
effector memory CD8-positive, alpha-beta T cell
3
endometrium adenocarcinoma
3
esophagus
3
esophagus muscularis mucosa
3
fibroblast of dermis
3
fibroblast of lung
3
hepatic stellate cell
3
hepatocyte(AFP)
3
immortal human breast epithelial cell line cell
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
Organ
5
brain
Life stage
embryonic
3
fetal
Date released
2
January, 2022
1
February, 2020
1
January, 2020
1
November, 2019
Software used
2
chromhmm
2
qTLtools
1
r
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
files.file_type!
bed bed3+
biosample_term_name!
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
relevant_life_stage!
embryonic
Showing 5 of 5 results
table-tab-icon
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Download
FileSet
DSR191XXQ
released
Annotation file set
: brain naive eQTL of studay ROSMAP from eQTL Catalogue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR999BSN
released
Annotation file set
: brain eQTL of studay BrainSeq from eQTL Catalogue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR267EUN
released
Annotation file set
: Gene expression levels of Brain fetal from RNA-seq (GSE63634)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR833MWK
released
Annotation file set
: ChromHMM 15-state model for fetal brain male from ENCODE ChIP-seq data. ROADMAP fetal brain male
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR073PLY
released
Annotation file set
: ChromHMM 15-state model for fetal brain female from ENCODE ChIP-seq data. ROADMAP fetal brain female
Lab:
AMP-T2D consortium
Project:
AMP