Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
gene expression
Annotation Category
1
Gene expression levels
1
cis-regulatory elements
Annotation type Category
snATAC-seq
1
ATAC-seq
1
RNA-seq
Available data
1
bed bed3+
1
bigWig
1
tsv
File set status
2
released
Genome assembly (visualization)
1
GRCh38
1
hg19
Organism
2
Homo sapiens
Biosample type
2
in vitro differentiated cells
Biosample term
129
monocyte
90
heart
86
stomach
81
kidney
68
lung
67
muscle of arm
64
HeLa-S3
63
small intestine
62
A549
62
adrenal gland
60
placenta
58
muscle of leg
56
large intestine
54
H1-hESC
54
common myeloid progenitor, CD34-positive
54
muscle of back
52
left lung
51
neural progenitor cell
49
liver
48
CD8-positive, alpha-beta T cell
48
thymus
45
right lung
44
islet of Langerhans
43
hematopoietic multipotent progenitor cell
42
right kidney
41
K562
40
B cell
40
renal cortex interstitium
40
renal pelvis
40
retina
36
left kidney
35
hepatocyte
35
spinal cord
34
heart left ventricle
34
spleen
32
CD4-positive, alpha-beta memory T cell
31
CD14-positive monocyte
31
adipose tissue
26
MCF-7
26
regulatory T cell
25
tibial nerve
24
body of pancreas
23
EndoC_BH1
23
T-helper 1 cell
23
epithelial cell of proximal tubule
23
sigmoid colon
23
trophoblast cell
22
CD8-positive, alpha-beta memory T cell
22
adipocyte
22
endothelial cell
22
foreskin keratinocyte
22
pancreas
21
T-helper 17 cell
21
glomerular endothelial cell
21
subcutaneous adipose tissue
20
breast cancer cell
20
coronary artery
20
mononuclear cell
20
natural killer cell
20
ovary
20
pigmented layer of retina
20
psoas muscle
19
endothelial cell of umbilical vein
19
foreskin fibroblast
19
heart right ventricle
19
pancreatic ductal cell
19
right atrium auricular region
18
HFFc6
18
embryonic stem cell
18
gastrocnemius medialis
18
keratinocyte
18
thyroid gland
18
tibial artery
18
transverse colon
17
HepG2
17
T-helper 2 cell
17
muscle of trunk
17
omental fat pad
17
osteoblast
17
testis
16
cardiac muscle cell
16
chorionic villus
16
fibroblast of lung
16
induced pluripotent stem cell
16
mesenchymal stem cell
16
skeletal muscle myoblast
16
skeletal muscle tissue
16
upper lobe of left lung
15
GM12878
15
ascending aorta
15
macrophage
15
neutrophil
15
retinal pigment epithelial cell
14
CD4-positive, alpha-beta T cell
14
H9
14
T cell
14
endocrine pancreas
14
endothelial cell of hepatic sinusoid
14
fibroblast of cardiac tissue
14
mammary gland epithelial cell
14
prostate gland
13
Peyer's patch
13
aorta
13
bronchial epithelial cell
13
neurosphere
12
fibroblast of dermis
12
left renal cortex interstitium
12
lymphoblastoid cell line
12
mammary epithelial cell
12
neuroblastoma cell
11
breast epithelium
11
epithelial cell of prostate
11
glomerular visceral epithelial cell
11
left cardiac atrium
11
left renal pelvis
11
naive thymus-derived CD4-positive, alpha-beta T cell
11
right renal pelvis
11
smooth muscle cell
10
22Rv1
10
Rhabdomyosarcoma
10
esophagus muscularis mucosa
10
esophagus squamous epithelium
10
gastric cancer cell
10
kidney tubule cell
10
lymphocyte
10
neuronal stem cell
10
progenitor cell of endocrine pancreas
10
right renal cortex interstitium
10
thoracic aorta
10
trophoblast
9
cardiomyocytes
9
colonic mucosa
9
diffuse intrinsic pontine glioma
9
esophagus
9
hepatic stellate cell
9
liposarcoma
9
pancreatic acinar cell
9
parathyroid adenoma
9
pericyte cell
9
skin fibroblast
9
tongue
9
vagina
8
B-lymphoblastoid cell line
8
GM12865
8
HEK293
8
IMR-90
8
NAMALWA cell
8
astrocyte
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
endodermal cell
8
fibroblast cell line
8
immortal human breast epithelial cell line cell
8
limb
8
lower leg skin
8
mesendoderm
8
myoepithelial cell of mammary gland
8
naive T cell
8
skeletal muscle satellite cell
7
AG04449 cell
7
AG04450 cell
7
AG09309 cell
7
AG09319 cell
7
AG10803 cell
7
BJ cell
7
CD1c-positive myeloid dendritic cell
7
CD4-positive helper T cell
7
CMK
7
Caco-2 cell
7
GM06990
7
GM12864
7
HT-29
7
T47D
7
WERI-Rb-1
7
cardiomyocytes (cardiac muscle cell)
7
chorion membrane
7
dermis lymphatic vessel endothelial cell
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
eye
7
fibroblast of pulmonary artery
7
foreskin melanocyte
7
kidney glomerular epithelial cell
7
mature neutrophil
7
pancreatic beta cell
7
renal cortical epithelial cell
7
right lobe of liver
7
stomach smooth muscle
7
uterus
6
Chondroid Chordoma
6
HAP-1
6
HUES8
6
Jurkat
6
KARPAS-422 cell
6
LNCAP
6
LoVo cell
6
MM.1S
6
OCI-LY7
6
PC-9
Organ
brain
Life stage
1
unknown
Date released
1
February, 2024
1
January, 2022
Software used
1
macs
1
r
Lab
2
AMP-T2D consortium
Project
2
AMP
RFA
2
AMP
organ_slims!
brain
annotation_type_category!
snATAC-seq
Showing 2 of 2 results
table-tab-icon
matrix-icon
Download
FileSet
DSR371MQC
released
Annotation file set
: Accessible chromatin annotation from ATAC-seq_iPSC-induced cortical excitatory neurons; Homo sapiens; ATAC-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR023OKO
released
Annotation file set
: Gene expression annotation of RNA-seq_iPSC-induced cortical excitatory neurons
Lab:
AMP-T2D consortium
Project:
AMP