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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
chromatin state
2
eQTL
1
accessible chromatin
Annotation Category
3
cis-regulatory elements
2
Genetic variant effects
Annotation type Category
2
ChIP-seq
2
RNA-seq
1
DNase-seq
Available data
2
bed bed9
2
bigBed bed9
1
bed bed3+
1
bigWig
File set status
5
released
Genome assembly (visualization)
9
hg19
5
GRCh38
Organism
5
Homo sapiens
Biosample type
5
tissue
Biosample term
100
monocyte
54
HeLa-S3
37
H1-hESC
23
neural progenitor cell
22
K562
22
fibroblast
19
HFFc6
19
endothelial cell
19
macrophage
19
pericyte cell
18
A549
17
hepatocyte
16
endothelial cell of hepatic sinusoid
13
common myeloid progenitor, CD34-positive
13
excitatory neuron
13
smooth muscle cell
12
coronary artery
12
kidney
11
B cell
11
T cell
11
tibial nerve
10
astrocyte
10
heart left ventricle
10
hematopoietic multipotent progenitor cell
10
tibial artery
9
CD4-positive, alpha-beta memory T cell
9
caudate nucleus
9
right atrium auricular region
8
ascending aorta
8
body of pancreas
8
cerebellum
8
frontal cortex
8
islet of Langerhans
8
omental fat pad
8
putamen
8
substantia nigra
7
CD8-positive, alpha-beta memory T cell
7
GM12878
7
adipose tissue
7
adrenal gland
7
colon epithelial cell
7
liver
7
lymphocyte
7
spleen
7
stomach
7
subcutaneous adipose tissue
6
Ammon's horn
6
H9
6
HepG2
6
iPSC derived cell line
6
keratinocyte
6
left cardiac atrium
6
lymphoblastoid cell line
6
mononuclear cell
6
olfactory receptor cell
6
pancreas
6
pancreatic acinar cell
6
pancreatic ductal cell
6
skeletal muscle satellite cell
5
MCF-7
5
amygdala
5
anterior cingulate cortex
5
brain
5
cortical cell of adrenal gland
5
endothelial cell of umbilical vein
5
erythroblast
5
fibroblast of cardiac tissue
5
heart
5
heart right ventricle
5
hypothalamus
5
inhibitory neuron
5
luminal epithelial cell of mammary gland
5
mammary gland epithelial cell
5
nucleus accumbens
5
regulatory T cell
5
right lobe of liver
5
sigmoid colon
5
thyroid gland
5
transverse colon
5
type II pneumocyte
4
C1 segment of cervical spinal cord
4
CD14-positive monocyte
4
CyT49
4
HUES8
4
T-helper 1 cell
4
T-helper 17 cell
4
T-helper 2 cell
4
angular gyrus
4
aorta
4
blood vessel smooth muscle cell
4
cerebellum (Hemisphere)
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
endocrine pancreas
4
enteric smooth muscle cell
4
foreskin keratinocyte
4
gabaergic neuron
4
gastrocnemius medialis
4
gastrocnemius medialis(Muscle - Skeletal)
4
glutamatergic neuron
4
layer of hippocampus
4
left ventricle myocardium
4
natural killer cell
4
osteoblast
4
ovary
4
pancreatic beta cell
4
psoas muscle
4
small intestine
4
smooth muscle cell of the esophagus
4
temporal lobe
4
thoracic aorta
3
cardiac fibroblast
3
CD4-positive helper T cell
3
HCT116
3
Peyer's patch
3
adipocyte
3
blood cell
3
endocardial cell
3
endometrium adenocarcinoma
3
endothelial cell of lymphatic vessel
3
enteric neuron
3
enterocyte
3
esophagus
3
esophagus muscularis mucosa
3
fibroblast of dermis
3
fibroblast of lung
3
hepatic stellate cell
3
immortal human breast epithelial cell line cell
3
kidney tubule cell
3
lung
3
mesothelial cell
3
microglial cell
3
naive T cell
3
neutrophil
3
oligodendrocyte precursor cell
3
pancreatic A cell
3
pancreatic alpha cell
3
prostate gland
3
retinal pigment epithelial cell
3
right cardiac atrium
3
schwann cell
3
skeletal muscle fiber
3
skeletal muscle tissue
3
skin of body
3
testis
3
type B pancreatic cell
3
type I pneumocyte
3
upper lobe of left lung
3
vagina
2
22Rv1
2
Brodmann (1909) area 46
2
CD4-positive, alpha-beta T cell
2
CD8-positive, alpha-beta T cell
2
GM18507
2
GM19238
2
GM19239
2
GM19240
2
LNCaP clone FGC
2
Muller cell
2
NAMALWA cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
SK-N-DZ
2
SK-N-SH
2
T47D
2
alveolar macrophage
2
astrocyte of the cerebellum
2
astrocyte of the hippocampus
2
basal cell
2
basal cell of epidermis
2
brain microvascular endothelial cell
2
breast epithelium
2
bronchial epithelial cell
2
cardiac endothelial cell
2
cardiac muscle cell
2
cerebellar cortex
2
choroid plexus epithelial cell
2
ciliated cell
2
cingulate gyrus
2
club cell
2
colon goblet cell
2
colonic mucosa
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
duodenal mucosa
2
eccrine cell
2
enterochromaffin-like cell
2
enterocyte of epithelium of small intestine
2
epithelial cell of prostate
2
epithelial cell of proximal tubule
2
esophagus squamous epithelium
2
fat cell
2
fetal cardiomyocyte
2
fibroblast of breast
2
fibroblast of the aortic adventitia
2
foreskin fibroblast
2
foveolar cell of stomach
2
globus pallidus
2
glomerular endothelial cell
2
glomerular visceral epithelial cell
2
granular cell of epidermis
2
intestinal tuft cell
Organ
5
brain
Life stage
embryonic
3
fetal
Date released
2
January, 2020
2
January, 2022
1
November, 2019
Software used
2
chromhmm
2
qTLtools
1
macs
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
relevant_life_stage!
embryonic
Showing 5 of 5 results
table-tab-icon
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Download
FileSet
DSR191XXQ
released
Annotation file set
: brain naive eQTL of studay ROSMAP from eQTL Catalogue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR999BSN
released
Annotation file set
: brain eQTL of studay BrainSeq from eQTL Catalogue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR833MWK
released
Annotation file set
: ChromHMM 15-state model for fetal brain male from ENCODE ChIP-seq data. ROADMAP fetal brain male
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR073PLY
released
Annotation file set
: ChromHMM 15-state model for fetal brain female from ENCODE ChIP-seq data. ROADMAP fetal brain female
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR271FEH
released
Annotation file set
: Accessible chromatin annotation of brain fetal from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP