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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
target gene predictions
1
variant allelic effects
Annotation Category
2
cis-regulatory elements
1
Genetic variant effects
1
Target gene links
Annotation type Category
4
DNase-seq
3
ChIP-seq
Available data
4
bed bed3+
File set status
4
released
Genome assembly (visualization)
5
hg19
GRCh38
Organism
4
Homo sapiens
Biosample type
cell line
4
primary cell
Biosample term
66
heart
66
stomach
56
kidney
52
brain
51
lung
50
muscle of arm
48
CD8-positive, alpha-beta T cell
47
adrenal gland
47
small intestine
45
placenta
43
large intestine
42
muscle of leg
41
common myeloid progenitor, CD34-positive
41
muscle of back
39
left lung
37
liver
37
thymus
35
retina
34
islet of Langerhans
34
right lung
33
B cell
33
hematopoietic multipotent progenitor cell
31
right kidney
30
monocyte
30
renal cortex interstitium
30
renal pelvis
27
CD14-positive monocyte
27
left kidney
25
adipose tissue
25
spleen
23
CD4-positive, alpha-beta memory T cell
23
regulatory T cell
22
endothelial cell
22
heart left ventricle
22
spinal cord
20
adipocyte
20
epithelial cell of proximal tubule
20
neural progenitor cell
20
pigmented layer of retina
19
T-helper 1 cell
19
glomerular endothelial cell
19
hepatocyte
19
natural killer cell
18
foreskin keratinocyte
18
pancreatic ductal cell
17
T-helper 17 cell
17
sigmoid colon
17
trophoblast cell
16
body of pancreas
16
mesenchymal stem cell
16
ovary
15
CD8-positive, alpha-beta memory T cell
15
psoas muscle
14
gastrocnemius medialis
14
mononuclear cell
14
pancreas
14
pancreatic alpha cell
14
tibial nerve
14
transverse colon
13
T-helper 2 cell
13
endothelial cell of umbilical vein
13
foreskin fibroblast
13
heart right ventricle
13
muscle of trunk
13
pancreatic beta cell
13
pancreatic delta cell
13
skeletal muscle tissue
13
testis
13
thyroid gland
13
upper lobe of left lung
12
T cell
12
caudate nucleus
12
chorionic villus
12
naive thymus-derived CD4-positive, alpha-beta T cell
12
neutrophil
12
osteoblast
12
subcutaneous adipose tissue
11
Peyer's patch
11
cardiomyocytes
11
endocrine pancreas
11
layer of hippocampus
11
mammary epithelial cell
11
mammary gland epithelial cell
11
retinal pigment epithelial cell
11
skeletal muscle myoblast
10
CD4-positive, alpha-beta T cell
10
bronchial epithelial cell
10
cardiac muscle cell
10
embryonic stem cell
10
fibroblast of lung
10
glomerular visceral epithelial cell
10
keratinocyte
10
neuronal stem cell
10
neurosphere
10
pancreatic acinar cell
10
prostate gland
10
smooth muscle cell
9
aorta
9
breast epithelium
9
coronary artery
9
esophagus squamous epithelium
9
extended pluripotent stem (EPS) cells
9
induced pluripotent stem cell
9
left renal cortex interstitium
9
left renal pelvis
9
macrophage
9
omental fat pad
8
T-cell acute lymphoblastic leukemia
8
ascending aorta
8
cardiomyocytes (cardiac muscle cell)
8
cerebellum
8
dermis blood vessel endothelial cell
8
esophagus muscularis mucosa
8
fibroblast
8
fibroblast of dermis
8
foreskin melanocyte
8
frontal cortex
8
lower leg skin
8
mesendoderm
8
naive thymus-derived CD8-positive, alpha-beta T cell
8
progenitor cell of endocrine pancreas
8
right atrium auricular region
8
right renal pelvis
8
trophoblast
7
chorion membrane
7
colonic mucosa
7
dendritic cell
7
epithelial cell of prostate
7
esophagus
7
eye
7
kidney interstitial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
kidney tubule cell
7
memory B cell
7
neuroblastoma cell line
7
temporal lobe
7
tibial artery
6
Ammon's horn
6
CD1c-positive myeloid dendritic cell
6
T-cell
6
angular gyrus
6
astrocyte
6
cardiac precursors (cardiac muscle cell)
6
cingulate gyrus
6
duodenal mucosa
6
endodermal cell
6
fibroblast of breast
6
fibroblast of cardiac tissue
6
fibroblast of mammary gland
6
fibroblast of pulmonary artery
6
fibroblast of villous mesenchyme
6
gamma-delta T cell
6
gastroesophageal sphincter
6
globus pallidus
6
hepatic stellate cell
6
kidney glomerular epithelial cell
6
limb
6
mesodermal cell
6
midbrain
6
mucosa of rectum
6
muscle layer of duodenum
6
naive T cell
6
neural cell
6
occipital lobe
6
pancreatic stellate cell
6
parathyroid adenoma
6
right renal cortex interstitium
6
skeletal muscle satellite cell
6
substantia nigra
6
thoracic aorta
6
tongue
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
Organ
4
brain
Life stage
3
unknown
Date released
2
September, 2022
1
February, 2021
1
May, 2020
Software used
2
r
1
deltasvm
1
encode-ccres
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
biosample_type!
cell line
software_used.software.name!
chromhmm
assembly!
GRCh38
Showing 4 of 4 results
table-tab-icon
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Download
FileSet
DSR489AIN
released
Annotation file set
: Candidate regulatory elements for BSS00091 astrocyte of the hippocampus from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR113KBA
released
Annotation file set
: Target gene predictions for BSS00091 astrocyte of the hippocampus from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR990VSV
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE astrocyte of the hippocampus
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR565ZWS
released
Annotation file set
: Genetic variants with deltaSVM predictions in brain hippocampus astrocyte DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP