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Schema
Citing CMDGA
Clear Filters
Annotation type
5
accessible chromatin
2
gene expression
Annotation Category
5
cis-regulatory elements
2
Gene expression levels
Genetic variant effects
Annotation type Category
5
snATAC-seq
2
snRNA-seq
Available data
5
bed bed3+
3
bigWig
File set status
7
released
Genome assembly (visualization)
7
hg19
3
GRCh38
Organism
7
Homo sapiens
Biosample type
cell line
7
primary cell
Biosample term
122
monocyte
88
heart
85
stomach
79
kidney
70
brain
67
lung
66
muscle of arm
62
small intestine
61
adrenal gland
59
placenta
58
muscle of leg
56
large intestine
54
common myeloid progenitor, CD34-positive
54
muscle of back
52
left lung
51
CD8-positive, alpha-beta T cell
48
thymus
47
neural progenitor cell
45
right lung
44
B cell
43
hematopoietic multipotent progenitor cell
41
liver
41
right kidney
39
renal cortex interstitium
39
renal pelvis
38
retina
36
endothelial cell
36
left kidney
35
hepatocyte
33
spleen
32
CD4-positive, alpha-beta memory T cell
31
CD14-positive monocyte
31
heart left ventricle
30
spinal cord
27
adipose tissue
26
adipocyte
26
regulatory T cell
25
islet of Langerhans
23
fibroblast
23
pancreatic ductal cell
23
sigmoid colon
23
trophoblast cell
22
CD8-positive, alpha-beta memory T cell
22
T-helper 1 cell
22
epithelial cell of proximal tubule
22
foreskin keratinocyte
22
natural killer cell
22
pericyte cell
20
T-helper 17 cell
20
glomerular endothelial cell
20
mononuclear cell
20
pigmented layer of retina
20
psoas muscle
20
smooth muscle cell
19
T cell
19
body of pancreas
19
endothelial cell of umbilical vein
19
ovary
19
pancreas
18
gastrocnemius medialis
18
heart right ventricle
18
tibial nerve
17
astrocyte
17
mesenchymal stem cell
17
muscle of trunk
17
osteoblast
17
pancreatic beta cell
17
thyroid gland
17
transverse colon
16
T-helper 2 cell
16
caudate nucleus
16
chorionic villus
16
endothelial cell of hepatic sinusoid
16
fibroblast of lung
16
foreskin fibroblast
16
keratinocyte
16
macrophage
16
pancreatic alpha cell
16
retinal pigment epithelial cell
16
testis
16
upper lobe of left lung
15
CD4-positive, alpha-beta T cell
15
embryonic stem cell
15
endocrine pancreas
15
layer of hippocampus
15
skeletal muscle myoblast
14
Peyer's patch
14
excitatory neuron
14
mammary gland epithelial cell
14
pancreatic acinar cell
14
pancreatic delta cell
14
skeletal muscle tissue
13
aorta
13
coronary artery
13
neurosphere
13
skeletal muscle satellite cell
13
temporal lobe
12
bronchial epithelial cell
12
cardiac muscle cell
12
fibroblast of cardiac tissue
12
fibroblast of dermis
12
mammary epithelial cell
12
prostate gland
12
tibial artery
11
ascending aorta
11
breast epithelium
11
cardiomyocytes
11
cerebellum
11
erythroblast
11
esophagus squamous epithelium
11
glomerular visceral epithelial cell
11
left renal cortex interstitium
11
omental fat pad
11
right atrium auricular region
10
angular gyrus
10
chorion membrane
10
colonic mucosa
10
dermis blood vessel endothelial cell
10
esophagus muscularis mucosa
10
frontal cortex
10
kidney tubule cell
10
left cardiac atrium
10
left renal pelvis
10
neuronal stem cell
10
pancreatic stellate cell
10
right renal pelvis
10
subcutaneous adipose tissue
10
substantia nigra
10
trophoblast
9
cingulate gyrus
9
duodenal mucosa
9
epithelial cell of prostate
9
esophagus
9
extended pluripotent stem (EPS) cells
9
eye
9
foreskin melanocyte
9
induced pluripotent stem cell
9
neutrophil
9
parathyroid adenoma
9
right renal cortex interstitium
9
skin fibroblast
9
thoracic aorta
9
tongue
8
Ammon's horn
8
T-cell acute lymphoblastic leukemia
8
endodermal cell
8
fibroblast of breast
8
fibroblast of mammary gland
8
fibroblast of pulmonary artery
8
fibroblast of villous mesenchyme
8
hepatic stellate cell
8
limb
8
lower leg skin
8
mesendoderm
8
myoepithelial cell of mammary gland
8
naive T cell
8
progenitor cell of endocrine pancreas
8
vagina
7
CD1c-positive myeloid dendritic cell
7
cardiomyocytes (cardiac muscle cell)
7
dendritic cell
7
globus pallidus
7
glutamatergic neuron
7
kidney glomerular epithelial cell
7
mature neutrophil
7
memory B cell
7
stomach smooth muscle
6
Brodmann (1909) area 46
6
T-cell
6
alternatively activated macrophage
6
bipolar neuron
6
choroid plexus epithelial cell
6
colon epithelial cell
6
dermis lymphatic vessel endothelial cell
6
gamma-delta T cell
6
kidney epithelial cell
6
kidney interstitial cell
6
kidney loop of Henle thin ascending limb epithelial cell
6
midbrain
6
mucosa of rectum
6
naive thymus-derived CD4-positive, alpha-beta T cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
neuroblastoma cell line
6
plasma cell
6
putamen
6
skeletal muscle fiber
6
superior temporal gyrus
6
urinary bladder
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive helper T cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
Organ
7
musculature of body
Date released
4
February, 2024
3
November, 2021
Software used
5
macs
2
deeptools
2
r
2
samtools
2
umitools
Lab
4
Stephen Parker, UMich
3
Bing Ren, UCSD
Project
4
AMP
3
ENCODE
RFA
4
AMP2
3
ENCODE3
biosample_type!
cell line
annotation_category!
Genetic variant effects
Showing 7 of 7 results
table-tab-icon
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Download
FileSet
DSR584RYA
released
Annotation file set
: Accessible chromatin annotation of Fetal Skeletal Myocyte 3 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR222MBS
released
Annotation file set
: Accessible chromatin annotation of Fetal Skeletal Myocyte 2 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR958BVX
released
Annotation file set
: Accessible chromatin annotation of Fetal Skeletal Myocyte 1 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR887UQH
released
Annotation file set
: Cell type chromatin broad peaks and bw of neuromuscular junction from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR353GUO
released
Annotation file set
: Cell type chromatin broad peaks and bw of muscle fiber mixed from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR040MIE
released
Annotation file set
: Cell type gene expression mean TPM and bw of neuromuscular junction from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR985XYU
released
Annotation file set
: Cell type gene expression mean TPM and bw of muscle fiber mixed from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP