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Schema
Citing CMDGA
Clear Filters
Annotation type
2
binding sites
1
accessible chromatin
1
candidate regulatory elements
1
chromatin state
histone modifications
Annotation Category
11
Gene expression levels
5
cis-regulatory elements
1
Target gene links
Annotation type Category
4
ChIP-seq
2
DNase-seq
Available data
4
bed bed3+
1
bed bed9
File set status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
5
cell line
Biosample term
64
heart
62
stomach
56
kidney
50
brain
50
muscle of arm
49
lung
45
small intestine
44
muscle of leg
43
adrenal gland
42
A549
42
placenta
41
large intestine
41
muscle of back
40
common myeloid progenitor, CD34-positive
39
left lung
34
right lung
33
retina
33
thymus
31
hematopoietic multipotent progenitor cell
31
right kidney
30
B cell
30
renal cortex interstitium
30
renal pelvis
27
left kidney
27
liver
25
spinal cord
23
CD4-positive, alpha-beta memory T cell
23
neural progenitor cell
23
spleen
22
heart left ventricle
20
pigmented layer of retina
19
monocyte
18
MCF-7
18
fibroblast
17
K562
17
endothelial cell
17
foreskin keratinocyte
16
adipocyte
16
adipose tissue
16
sigmoid colon
15
CD8-positive, alpha-beta memory T cell
15
T cell
14
embryonic stem cell
14
endothelial cell of umbilical vein
14
hepatocyte
14
retinal pigment epithelial cell
14
trophoblast cell
13
CD8-positive, alpha-beta T cell
13
gastrocnemius medialis
13
macrophage
13
mononuclear cell
12
CD14-positive monocyte
12
CD4-positive, alpha-beta T cell
12
T-helper 1 cell
12
excitatory neuron
12
foreskin fibroblast
12
pancreas
12
pericyte cell
12
psoas muscle
12
regulatory T cell
12
thyroid gland
12
tibial nerve
12
upper lobe of left lung
11
Peyer's patch
11
cardiac muscle cell
11
endothelial cell of hepatic sinusoid
11
fibroblast of lung
11
heart right ventricle
11
islet of Langerhans
11
keratinocyte
11
natural killer cell
11
ovary
11
skeletal muscle myoblast
11
smooth muscle cell
11
testis
11
transverse colon
10
T-helper 17 cell
10
T-helper 2 cell
10
chorionic villus
10
layer of hippocampus
10
muscle of trunk
10
osteoblast
9
EndoC_BH1
9
HeLa-S3
9
HepG2
9
astrocyte
9
body of pancreas
9
caudate nucleus
9
coronary artery
9
endocrine pancreas
9
fibroblast of cardiac tissue
9
mammary gland epithelial cell
9
mesenchymal stem cell
9
neurosphere
9
skeletal muscle tissue
9
temporal lobe
8
H9
8
breast cancer cell
8
bronchial epithelial cell
8
esophagus squamous epithelium
8
fibroblast of dermis
8
left cardiac atrium
8
left renal cortex interstitium
8
pancreatic beta cell
8
pancreatic ductal cell
8
skeletal muscle satellite cell
8
tibial artery
7
22Rv1
7
GM12878
7
HEK293
7
SK-N-DZ
7
SK-N-SH
7
aorta
7
ascending aorta
7
breast epithelium
7
colonic mucosa
7
erythroblast
7
esophagus muscularis mucosa
7
kidney tubule cell
7
left renal pelvis
7
mammary epithelial cell
7
omental fat pad
7
pancreatic acinar cell
7
prostate gland
7
right renal pelvis
7
substantia nigra
7
tongue
6
GM06990
6
GM12864
6
GM12865
6
H1-hESC
6
HL-60
6
IMR-90
6
NAMALWA cell
6
SGBS preadipocytes
6
SK-N-MC
6
WI38
6
angular gyrus
6
choroid plexus epithelial cell
6
cingulate gyrus
6
dermis blood vessel endothelial cell
6
duodenal mucosa
6
epithelial cell of prostate
6
fibroblast cell line
6
lower leg skin
6
neuronal stem cell
6
neutrophil
6
right atrium auricular region
6
right renal cortex interstitium
6
skin fibroblast
6
thoracic aorta
6
trophoblast
5
AG04449 cell
5
AG04450 cell
5
AG09309 cell
5
AG09319 cell
5
AG10803 cell
5
Ammon's horn
5
BE(2)-C
5
BJ cell
5
CD14-positive, CD16-negative classical monocyte
5
CD1c-positive myeloid dendritic cell
5
CMK
5
Caco-2 cell
5
Daoy
5
GM08714
5
GM10248
5
GM10266
5
GM12875
5
GM19240
5
GM23248
5
HAP-1
5
HT-29
5
HUES6
5
KARPAS-422 cell
5
KBM-7
5
LHCN-M2
5
LNCaP clone FGC
5
MG63
5
MM.1S
5
NT2-D1 cell
5
OCI-LY7
5
PC-3
5
PC-9
5
RPMI8226
5
RWPE1
5
SJSA1
5
SW480
5
T47D
5
WERI-Rb-1
5
esophagus
5
fibroblast of breast
5
glomerular visceral epithelial cell
5
hepatic stellate cell
5
immortal human breast epithelial cell line cell
5
limb
5
mature neutrophil
5
midbrain
5
muscle layer of duodenum
5
myoepithelial cell of mammary gland
Life stage
2
embryonic
Date released
2
September, 2022
1
February, 2021
1
June, 2020
1
October, 2022
Software used
2
chromhmm
2
macs
1
r
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
annotation_type!
histone modifications
Showing 5 of 5 results
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Download
FileSet
DSR302OYN
released
Annotation file set
: Binding sites annotation for AG04450 cell (AG04450) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR012QHF
released
Annotation file set
: Candidate regulatory elements for BSS00062 AG04450 cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR534PYT
released
Annotation file set
: Chromatin states for BSS00062 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR183QFO
released
Annotation file set
: Binding sites annotation for Lung AG04450 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR515IEQ
released
Annotation file set
: Accessible chromatin annotation for Lung AG04450 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP