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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
1
binding sites
1
histone modifications
Annotation Category
4
cis-regulatory elements
Annotation type Category
2
ChIP-seq
2
snATAC-seq
DNase-seq
Available data
4
bed bed3+
1
bigWig
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
2
in vitro differentiated cells
2
primary cell
Biosample term
103
monocyte
32
CD8-positive, alpha-beta T cell
30
neural progenitor cell
23
retina
20
breast cancer cell
20
pigmented layer of retina
19
endothelial cell
19
fibroblast
13
excitatory neuron
13
macrophage
12
endothelial cell of hepatic sinusoid
12
neuroblastoma cell
11
embryonic stem cell
11
gastric cancer cell
11
hepatocyte
11
pancreatic ductal cell
10
EndoC_BH1
10
diffuse intrinsic pontine glioma
10
kidney
9
Rhabdomyosarcoma
9
astrocyte
9
keratinocyte
9
liposarcoma
9
pericyte cell
8
T-cell acute lymphoblastic leukemia
8
esophageal adenocarcinoma
8
neuroblastoma cell line
8
pancreatic acinar cell
8
pancreatic beta cell
8
retinal pigment epithelial cell
8
smooth muscle cell
7
B-lymphoblastoid cell line
7
HepG2
7
adipocyte
7
chondrocyte
7
fibroblast cell line
7
hESC cell
7
melanoma
7
osteosarcoma
7
pancreatic alpha cell
6
Chondroid Chordoma
6
T cell
6
acute myeloid leukemia
6
glioblastoma multiforme cancer stem cell
6
glutamatergic neuron
6
islet of Langerhans
6
liver
6
mammary epithelial cell
6
neuronal stem cell
6
osteoblast
6
prostate cancer cell line
6
squamous cell lung carcinoma
5
B cell
5
Ewing sarcoma
5
SGBS preadipocytes
5
cardiac muscle cell
5
diffuse large B-cell lymphoma
5
erythroblast
5
esophageal squamous cell carcinoma
5
fibroblast of cardiac tissue
5
inhibitory neuron
5
lymphoblastoid cell line
5
melanoma cell
5
pancreatic delta cell
5
triple-negative breast cancer
4
HS-SY-2 cell
4
Jurkat
4
MCF-7
4
Mantle cell lymphoma
4
RS4-11 cell
4
Rh-4 cell
4
Th1 cell
4
Tumor-derived cell line
4
adipose-derived stem cell
4
aortic endothelial cell
4
brain
4
bronchial epithelial cell
4
colon adenocarcinoma
4
dermal fibroblast
4
erythroid progenitor cell
4
foreskin fibroblast
4
glial cell
4
glioblastoma cell
4
glioma cell
4
hepatic stellate cell
4
immortal neural cell line cell
4
leukemic stem cell
4
mammary gland epithelial cell
4
mesenchymal stem cell
4
metastatic melanoma
4
pancreatic cell line
4
pancreatic stellate cell
4
preadipocyte
4
rhabdomyosarcoma cell
4
skeletal muscle fiber
4
skeletal muscle satellite cell
4
synovial sarcoma cell
4
tracheal epithelial cell
3
B-lymphocyte
3
COLO-320 cell
3
COLO205
3
adipose tissue
3
chronic lymphocytic leukemia cell
3
colon epithelial cell
3
cortical cell of adrenal gland
3
enterocyte
3
epithelial ovarian cancer cell
3
gabaergic neuron
3
heart
3
hematopoietic cell
3
lung fibroblast cell line
3
lymphoblast
3
mast cell
3
mononuclear cell of bone marrow
3
multiple myeloma cell line
3
naive thymus-derived CD4-positive, alpha-beta T cell
3
natural killer cell
3
pancreas
3
pancreatic ductal adenocarcinoma
3
pre-B acute lymphoblastic leukemia cell
3
prostate derived cell line
3
prostate gland
3
smooth muscle cell of the coronary artery
2
143B
2
22Rv1
2
501A
2
697 cell
2
769-P cell
2
786-O cell
2
A-1847 cell
2
A-375 cell
2
A-498 cell
2
A-673 cell
2
A549
2
AG04449 cell
2
AG04450 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803 cell
2
AGS cell
2
ALL-SIL cell
2
Adipose stromal cell
2
AsPC-1 cell
2
B-cell lymphoma cell
2
BCBL-1 cell
2
BE(2)-C
2
BEAS-2B cell
2
BG03
2
BICR 31
2
BJ cell
2
BT-474 cell
2
BT-549 cell
2
Burkitt's lymphoma
2
BxPC-3 cell
2
C666-1 cell
2
CA46 cell
2
CAL-51 cell
2
CCRF-CEM cell
2
CD1c-positive myeloid dendritic cell
2
CD34-positive, CD38-negative hematopoietic stem cell
2
CD8-Positive T-Lymphocytes
2
CFPAC-1 cell
2
CHL-1 cell
2
CHP-134 cell
2
CMK
2
COLO 741 cell
2
CTV-1 cell
2
CaSki cell
2
Caco-2 cell
2
Caki-1 cell
2
Calu-1 cell
2
Calu-3 cell
2
D283 Med cell
2
D341 Med cell
2
DK cell
2
DLD-1 cell
2
DND-41 cell
2
DOHH-2 cell
2
DU 145 cell
2
Daudi
2
Detroit562
2
EAhy 926 cell
2
EOL-1 cell
2
FaDu cell
2
Fallopian Tube Carcinoma
2
G-401 cell
2
GM06990
2
GM10847
2
GM12864
2
GM12865
2
GM12866
2
GM12872
2
GM12873
2
GM12875
2
GM12878
2
GM12891
2
GM12892
2
GM18505
2
GM18526
2
GM18951
Organ
4
connective tissue
Life stage
1
unknown
Date released
2
February, 2021
1
February, 2024
1
May, 2022
Software used
12
r
4
macs
3
chromhmm
1
deeptools
1
eigenmt
1
nospecificsoft_customcode
1
qTLtools
1
rasqual
1
samtools
1
umitools
Lab
3
AMP-T2D consortium
1
Stephen Parker, UMich
Project
4
AMP
RFA
3
AMP
1
AMP2
annotation_type_category!
DNase-seq
Showing 4 of 4 results
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Download
FileSet
DSR707RQM
released
Annotation file set
: Accessible chromatin from snATAC-seq of mesenchymal stem cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR337GCY
released
Annotation file set
: Histone modifications annotation for Others Mesenchymal_stem_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR959CJP
released
Annotation file set
: Binding sites annotation for Others Mesenchymal_stem_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR847RRB
released
Annotation file set
: Cell type chromatin broad peaks and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP