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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
4
candidate regulatory elements
3
chromatin state
2
target gene predictions
1
histone modifications
Annotation Category
7
cis-regulatory elements
Annotation type Category
7
ChIP-seq
4
DNase-seq
Available data
5
bed bed3+
2
bed bed9
File set status
7
released
Genome assembly (visualization)
7
hg19
2
GRCh38
Organism
7
Homo sapiens
Biosample type
primary cell
7
tissue
Biosample term
59
stomach
58
heart
49
lung
49
muscle of arm
47
brain
45
kidney
44
small intestine
42
adrenal gland
42
muscle of leg
41
muscle of back
40
large intestine
40
placenta
39
A549
39
left lung
33
right lung
31
thymus
30
right kidney
29
hematopoietic multipotent progenitor cell
29
renal cortex interstitium
28
renal pelvis
27
left kidney
22
liver
21
spinal cord
21
spleen
19
heart left ventricle
15
sigmoid colon
14
K562
14
MCF-7
13
adipose tissue
12
body of pancreas
12
chorionic villus
12
gastrocnemius medialis
12
muscle of trunk
12
ovary
12
thyroid gland
12
transverse colon
11
endocrine pancreas
11
heart right ventricle
11
psoas muscle
10
Peyer's patch
10
adipocyte
10
layer of hippocampus
10
temporal lobe
10
testis
10
tibial nerve
10
upper lobe of left lung
9
caudate nucleus
9
neural progenitor cell
9
retina
9
skeletal muscle tissue
8
H9
8
HeLa-S3
8
angular gyrus
8
aorta
8
esophagus squamous epithelium
8
left cardiac atrium
8
left renal cortex interstitium
8
left renal pelvis
8
lower leg skin
8
pancreas
8
right renal pelvis
8
substantia nigra
7
ascending aorta
7
breast epithelium
7
cingulate gyrus
7
colonic mucosa
7
duodenal mucosa
7
esophagus muscularis mucosa
7
mucosa of rectum
7
omental fat pad
7
parathyroid adenoma
7
right renal cortex interstitium
7
stomach smooth muscle
7
thoracic aorta
6
22Rv1
6
SK-N-DZ
6
SK-N-SH
6
WI38
6
chorion membrane
6
coronary artery
6
endodermal cell
6
endometrium adenocarcinoma
6
esophagus
6
eye
6
gastroesophageal sphincter
6
immortal human breast epithelial cell line cell
6
muscle layer of colon
6
muscle layer of duodenum
6
prostate gland
6
subcutaneous abdominal adipose tissue
6
tibial artery
6
tongue
6
trophoblast
6
vagina
5
LNCaP clone FGC
5
T47D
5
cardiac muscle cell
5
cerebellum
5
embryonic stem cell
5
limb
5
mesenchymal stem cell
5
mesodermal cell
5
right atrium auricular region
5
right cardiac atrium
5
urinary bladder
4
Brodmann (1909) area 46
4
GM12878
4
HEK293
4
HepG2
4
NAMALWA cell
4
frontal cortex
4
germinal matrix
4
muscle cell
4
neural cell
4
uterus
3
A172
3
A673
3
ACC112
3
ACHN
3
Ammon's horn
3
C4-2B
3
CMK
3
Caki2
3
DND-41
3
DOHH2
3
Daoy
3
EH
3
EL
3
ELF-1
3
ELR
3
G401
3
GM04503
3
GM04504
3
GM06990
3
GM08714
3
GM10248
3
GM10266
3
GM12864
3
GM12865
3
GM12875
3
GM23248
3
GM23338
3
H1-hESC
3
H4
3
H54
3
HAP-1
3
HCT116
3
HL-60
3
HS-27A
3
HS-5
3
HT-29
3
HT1080
3
HUES48
3
HUES6
3
HUES64
3
IMR-90
3
KARPAS-422 cell
3
KBM-7
3
KMS-11
3
KOPT-K1
3
L1-S8
3
LHCN-M2
3
Loucy
3
M059J
3
MCF 10A
3
MG63
3
MM.1S
3
NB4
3
NCI-H929
3
OCI-LY1
3
OCI-LY3
3
OCI-LY7
3
PC-3
3
PC-9
3
Panc1
3
RCC 7860
3
RPMI7951
3
RPMI8226
3
RWPE1
3
RWPE2
3
SJCRH30
3
SJSA1
3
SK-MEL-5
3
SK-N-MC
3
SU-DHL-6
3
SW480
3
UCSF-4
3
WERI-Rb-1
3
amnion
3
bipolar neuron
3
cerebellar cortex
3
ectodermal cell
3
femur
3
globus pallidus
3
hepatocyte
3
iPS DF 19.11
3
iPS DF 19.7
3
iPS DF 6.9
3
iPS-11a
3
iPS-15b
Organ
7
intestine
7
large intestine
Life stage
6
adult
Date released
4
September, 2022
2
February, 2021
1
August, 2017
Software used
3
chromhmm
2
encode-ccres
2
r
Lab
6
AMP-T2D consortium
1
Stephen Parker, UMich
Project
7
AMP
RFA
7
AMP
biosample_type!
primary cell
Showing 7 of 7 results
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Download
FileSet
DSR809VPE
released
Annotation file set
: Candidate regulatory elements for BSS00228 colonic mucosa from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR394QSN
released
Annotation file set
: Candidate regulatory elements for BSS00227 colonic mucosa from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR663ZTW
released
Annotation file set
: Chromatin states for BSS00228 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR230SUN
released
Annotation file set
: Chromatin states for BSS00227 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR389KXN
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE colonic mucosa
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR504AUN
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE colonic mucosa
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR420347
released
Annotation file set
: ChromHMM 13-state model for Colonic mucosa
Lab:
Stephen Parker, UMich
Project:
AMP