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Schema
Citing CMDGA
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Annotation type
chromatin state
1
gene expression
1
target gene predictions
Annotation Category
1
Gene expression levels
1
Target gene links
Annotation type Category
1
RNA-seq
1
pCHi-C
Available data
1
bed bed3+
1
tsv
File set status
2
released
Genome assembly (visualization)
1
hg19
Organism
2
Homo sapiens
Biosample type
1
in vitro differentiated cells
1
primary cell
Biosample term
63
stomach
62
heart
61
HeLa-S3
52
kidney
52
lung
50
muscle of arm
49
H1-hESC
49
brain
47
adrenal gland
47
small intestine
42
placenta
41
A549
41
common myeloid progenitor, CD34-positive
41
large intestine
41
muscle of back
41
muscle of leg
39
left lung
35
islet of Langerhans
34
thymus
33
liver
33
right lung
32
right kidney
31
K562
30
hematopoietic multipotent progenitor cell
30
renal cortex interstitium
29
B cell
29
renal pelvis
27
CD14-positive monocyte
27
left kidney
26
monocyte
24
spleen
23
CD4-positive, alpha-beta memory T cell
23
adipose tissue
23
spinal cord
22
endothelial cell
22
hepatocyte
21
epithelial cell of proximal tubule
21
heart left ventricle
20
body of pancreas
20
regulatory T cell
19
HFFc6
19
T-helper 1 cell
18
T-helper 17 cell
18
glomerular endothelial cell
18
tibial nerve
17
CD8-positive, alpha-beta T cell
17
macrophage
17
subcutaneous adipose tissue
16
MCF-7
16
induced pluripotent stem cell
16
neural progenitor cell
16
ovary
16
sigmoid colon
15
CD8-positive, alpha-beta memory T cell
15
H9
15
caudate nucleus
15
coronary artery
15
foreskin keratinocyte
15
natural killer cell
15
trophoblast cell
14
T-helper 2 cell
14
omental fat pad
14
psoas muscle
14
right atrium auricular region
14
smooth muscle cell
14
substantia nigra
14
transverse colon
13
EndoC_BH1
13
T cell
13
adipocyte
13
endothelial cell of umbilical vein
13
heart right ventricle
13
mononuclear cell
13
thyroid gland
12
ascending aorta
12
cerebellum
12
chorionic villus
12
fibroblast
12
foreskin fibroblast
12
frontal cortex
12
gastrocnemius medialis
12
muscle of trunk
12
pancreatic ductal cell
12
skeletal muscle tissue
11
CD4-positive, alpha-beta T cell
11
GM12878
11
cardiac muscle cell
11
cardiomyocytes
11
fibroblast of lung
11
neutrophil
11
retina
11
testis
11
tibial artery
10
Peyer's patch
10
endocrine pancreas
10
left renal cortex interstitium
10
mesenchymal stem cell
10
pancreas
10
pericyte cell
10
putamen
10
skeletal muscle myoblast
9
Ammon's horn
9
aorta
9
fibroblast of dermis
9
naive thymus-derived CD4-positive, alpha-beta T cell
9
neurosphere
9
pancreatic beta cell
9
pancreatic delta cell
8
SK-N-SH
8
breast epithelium
8
cardiomyocytes (cardiac muscle cell)
8
dermis blood vessel endothelial cell
8
esophagus
8
extended pluripotent stem (EPS) cells
8
layer of hippocampus
8
pancreatic acinar cell
8
pituitary stalk
8
progenitor cell of endocrine pancreas
8
right renal pelvis
8
upper lobe of left lung
7
HepG2
7
astrocyte
7
dendritic cell
7
fibroblast of cardiac tissue
7
glomerular visceral epithelial cell
7
keratinocyte
7
left renal pelvis
7
lower leg skin
7
lymphocyte
7
mammary gland epithelial cell
7
pancreatic alpha cell
6
22Rv1
6
SK-N-DZ
6
T-cell
6
WI38
6
amygdala
6
angular gyrus
6
anterior cingulate cortex
6
bronchial epithelial cell
6
cardiac precursors (cardiac muscle cell)
6
cerebellum (Hemisphere)
6
chorion membrane
6
cingulate gyrus
6
colonic mucosa
6
endodermal cell
6
endometrium adenocarcinoma
6
esophagus muscularis mucosa
6
esophagus squamous epithelium
6
eye
6
fibroblast of breast
6
gamma-delta T cell
6
immortal human breast epithelial cell line cell
6
lymphoblastoid cell line
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
parathyroid adenoma
6
right renal cortex interstitium
6
temporal lobe
6
thoracic aorta
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
CD4-positive helper T cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
HCT116
5
HEK293
5
IMR-90
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
LNCaP clone FGC
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
Date released
1
March, 2020
1
May, 2021
Software used
macs
1
nospecificsoft_customcode
1
r
Lab
2
AMP-T2D consortium
Project
2
AMP
RFA
2
AMP
annotation_type!
chromatin state
software_used.software.name!
macs
Showing 2 of 2 results
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Download
FileSet
DSR740DPX
released
Annotation file set
: Gene expression annotation of embryonic stem cell Undifferentiated ES cell from embryonic stem cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR929DUM
released
Annotation file set
: A target gene prediction annotation in Human Human ES Cells of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP