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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
7
accessible chromatin
6
chromatin state
5
binding sites
3
histone modifications
2
target gene predictions
1
candidate regulatory elements
1
gene expression
Annotation Category
8
cis-regulatory elements
Annotation type Category
6
ATAC-seq
2
DNase-seq
1
ChIP-seq
Available data
7
bed bed3+
File set status
8
released
Genome assembly (visualization)
7
hg19
Organism
8
Homo sapiens
Biosample type
6
in vitro differentiated cells
2
cell line
Biosample term
43
stomach
42
heart
39
kidney
34
muscle of arm
33
lung
31
brain
30
small intestine
29
adrenal gland
29
muscle of leg
29
retina
28
large intestine
28
muscle of back
27
common myeloid progenitor, CD34-positive
27
placenta
26
left lung
23
right lung
22
A549
22
B cell
21
renal cortex interstitium
21
renal pelvis
21
right kidney
21
thymus
20
hematopoietic multipotent progenitor cell
20
pigmented layer of retina
18
left kidney
18
monocyte
17
liver
17
spleen
16
endothelial cell
16
fibroblast
16
spinal cord
15
neural progenitor cell
14
CD4-positive, alpha-beta memory T cell
14
heart left ventricle
13
excitatory neuron
13
macrophage
12
CD8-positive, alpha-beta T cell
12
foreskin keratinocyte
11
T cell
11
hepatocyte
11
pericyte cell
11
retinal pigment epithelial cell
11
sigmoid colon
11
smooth muscle cell
10
MCF-7
10
adipocyte
10
astrocyte
10
natural killer cell
10
pancreas
10
regulatory T cell
10
trophoblast cell
9
CD4-positive, alpha-beta T cell
9
T-helper 1 cell
9
adipose tissue
9
gastrocnemius medialis
9
ovary
9
thyroid gland
9
tibial nerve
9
transverse colon
8
CD14-positive monocyte
8
CD8-positive, alpha-beta memory T cell
8
EndoC_BH1
8
K562
8
Peyer's patch
8
body of pancreas
8
cardiac muscle cell
8
chorionic villus
8
endothelial cell of umbilical vein
8
foreskin fibroblast
8
muscle of trunk
8
pancreatic beta cell
8
pancreatic ductal cell
8
psoas muscle
8
testis
8
upper lobe of left lung
7
H9
7
T-helper 17 cell
7
T-helper 2 cell
7
caudate nucleus
7
endocrine pancreas
7
esophagus squamous epithelium
7
fibroblast of cardiac tissue
7
heart right ventricle
7
islet of Langerhans
7
left renal cortex interstitium
7
left renal pelvis
7
mesenchymal stem cell
7
mononuclear cell
7
neurosphere
7
omental fat pad
7
osteoblast
7
pancreatic acinar cell
7
pancreatic alpha cell
7
right renal pelvis
7
skeletal muscle satellite cell
6
SGBS preadipocytes
6
breast epithelium
6
coronary artery
6
dermis blood vessel endothelial cell
6
embryonic stem cell
6
endothelial cell of hepatic sinusoid
6
esophagus muscularis mucosa
6
fibroblast of lung
6
glutamatergic neuron
6
layer of hippocampus
6
lower leg skin
6
right atrium auricular region
6
right renal cortex interstitium
6
skeletal muscle myoblast
6
skeletal muscle tissue
6
tibial artery
5
HeLa-S3
5
SK-N-DZ
5
WI38
5
ascending aorta
5
bronchial epithelial cell
5
chondrocyte
5
epithelial cell of prostate
5
erythroblast
5
eye
5
foreskin melanocyte
5
gastroesophageal sphincter
5
glomerular visceral epithelial cell
5
inhibitory neuron
5
keratinocyte
5
kidney tubule cell
5
mammary gland epithelial cell
5
naive thymus-derived CD4-positive, alpha-beta T cell
5
pancreatic delta cell
5
parathyroid adenoma
5
prostate gland
5
skeletal muscle fiber
5
skin fibroblast
5
subcutaneous abdominal adipose tissue
5
substantia nigra
5
temporal lobe
5
thoracic aorta
5
tongue
5
trophoblast
4
22Rv1
4
Ammon's horn
4
HEK293
4
HepG2
4
SK-N-SH
4
T-cell
4
angular gyrus
4
aorta
4
cerebellum
4
chorion membrane
4
choroid plexus epithelial cell
4
cingulate gyrus
4
colon epithelial cell
4
colonic mucosa
4
duodenal mucosa
4
endodermal cell
4
esophagus
4
fibroblast of breast
4
fibroblast of dermis
4
frontal cortex
4
globus pallidus
4
glomerular endothelial cell
4
hepatic stellate cell
4
kidney glomerular epithelial cell
4
limb
4
mammary epithelial cell
4
memory B cell
4
mesodermal cell
4
mucosa of rectum
4
muscle layer of colon
4
muscle layer of duodenum
4
myoepithelial cell of mammary gland
4
neural cell
4
neuron
4
neutrophil
4
pancreatic stellate cell
4
peripheral blood mononuclear cell
4
putamen
4
renal cortical epithelial cell
4
stomach smooth muscle
4
subcutaneous adipose tissue
4
type II pneumocyte
4
urinary bladder
4
uterus
4
vagina
3
cardiac fibroblast
3
A172
3
ACHN
3
CD1c-positive myeloid dendritic cell
3
CMK
3
Caki2
3
Daoy
3
GM04503
3
GM04504
3
GM06990
3
GM10248
3
GM10266
3
GM12864
3
GM12865
3
GM12878
3
GM23248
Disease term
1
neuroblastoma
Organ
2
brain
Life stage
1
child
Date released
5
May, 2021
1
June, 2020
1
November, 2022
1
September, 2022
Software used
7
macs
1
r
Lab
7
AMP-T2D consortium
1
Struan F.A. Grant, CHOP
Project
8
AMP
RFA
7
AMP
1
AMP2
Showing 8 of 8 results
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Download
FileSet
DSR455VRI
released
Annotation file set
: Accessible chromatin of an established embryonic stem cell derived hypothalamic-like neuron model across three stages of in vitro differentiation (Embryonic Stem Cell).
Lab:
Struan F.A. Grant, CHOP
Project:
AMP
FileSet
DSR384UZS
released
Annotation file set
: Candidate regulatory elements for BSS00102 BE(2)-C from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR995THT
released
Annotation file set
: Accessible chromatin of differentiated hESCs from GSE149148 at developmental stage Late pancreatic progenitor cells
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR305VKL
released
Annotation file set
: Accessible chromatin of differentiated hESCs from GSE149148 at developmental stage Early pancreatic progenitor cells
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR323EMN
released
Annotation file set
: Accessible chromatin of differentiated hESCs from GSE149148 at developmental stage Gut tube cells
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR838FNO
released
Annotation file set
: Accessible chromatin of differentiated hESCs from GSE149148 at developmental stage Embyonic stem cells
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR661PJZ
released
Annotation file set
: Accessible chromatin of differentiated hESCs from GSE149148 at developmental stage Definitive endoderm cells
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR420CEV
released
Annotation file set
: Accessible chromatin annotation for Neural BE(2)-C from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP