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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
6
accessible chromatin
5
chromatin state
3
binding sites
2
histone modifications
1
gene expression
1
target gene predictions
Annotation Category
2
cis-regulatory elements
1
Gene expression levels
1
Target gene links
Annotation type Category
2
ChIP-seq
1
RNA-seq
1
pCHi-C
Available data
3
bed bed3+
1
tsv
File set status
4
released
Genome assembly (visualization)
3
hg19
Organism
4
Homo sapiens
Biosample type
2
in vitro differentiated cells
1
cell line
1
primary cell
Biosample term
104
monocyte
55
HeLa-S3
48
H1-hESC
38
CD8-positive, alpha-beta T cell
28
neural progenitor cell
24
K562
24
heart
23
kidney
22
stomach
21
hepatocyte
20
A549
20
brain
19
CD14-positive monocyte
19
HFFc6
18
adrenal gland
18
endothelial cell
18
lung
17
epithelial cell of proximal tubule
16
muscle of arm
16
placenta
16
small intestine
15
glomerular endothelial cell
15
large intestine
15
thymus
14
B cell
14
common myeloid progenitor, CD34-positive
13
islet of Langerhans
13
liver
13
muscle of leg
12
hematopoietic multipotent progenitor cell
12
left lung
12
muscle of back
11
adipose tissue
11
breast cancer cell
11
cardiomyocytes
10
EndoC_BH1
10
T-helper 1 cell
10
T-helper 17 cell
10
pancreatic ductal cell
10
regulatory T cell
9
CD4-positive, alpha-beta memory T cell
9
GM12878
9
adipocyte
9
extended pluripotent stem (EPS) cells
9
gastric cancer cell
9
heart left ventricle
9
induced pluripotent stem cell
9
left kidney
9
progenitor cell of endocrine pancreas
9
renal pelvis
9
right kidney
9
right lung
8
H9
8
HepG2
8
MCF-7
8
Rhabdomyosarcoma
8
keratinocyte
8
lymphocyte
8
pituitary stalk
8
spinal cord
7
B-lymphoblastoid cell line
7
CD8-positive, alpha-beta memory T cell
7
body of pancreas
7
cardiomyocytes (cardiac muscle cell)
7
dendritic cell
7
diffuse intrinsic pontine glioma
7
esophageal adenocarcinoma
7
kidney loop of Henle thin ascending limb epithelial cell
7
natural killer cell
7
neuroblastoma cell
7
ovary
7
pancreatic acinar cell
7
pericyte cell
7
renal cortex interstitium
7
smooth muscle cell
7
spleen
6
Chondroid Chordoma
6
T-helper 2 cell
6
astrocyte
6
fibroblast
6
fibroblast of cardiac tissue
6
hESC cell
6
heart right ventricle
6
kidney interstitial cell
6
psoas muscle
5
CyT49
5
T cell
5
T-cell acute lymphoblastic leukemia
aorta
5
cardiac precursors (cardiac muscle cell)
5
caudate nucleus
5
cerebellum
5
foreskin fibroblast
5
foreskin keratinocyte
5
gastrocnemius medialis
5
glomerular visceral epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
liposarcoma
5
macrophage
5
mammary gland epithelial cell
5
mesenchymal stem cell
5
pancreas
5
pancreatic beta cell
5
sigmoid colon
5
trophoblast cell
4
HUES8
4
Jurkat
4
adult endothelial progenitor cell
4
bone tissue
4
bronchial epithelial cell
4
cardiac muscle cell
4
chorionic villus
4
colon epithelial cell
4
coronary artery
4
embryonic stem cell
4
endocrine pancreas
4
endothelial cell of hepatic sinusoid
4
endothelial cell of umbilical vein
4
epithelial cell of prostate
4
fibroblast of dermis
4
fibroblast of lung
4
frontal cortex
4
gamma-delta T cell
4
hepatic stellate cell
4
kidney connecting tubule epithelial cell
4
kidney cortex collecting duct principal cell
4
kidney distal convoluted tubule epithelial cell
4
layer of hippocampus
4
mammary epithelial cell
4
mononuclear cell
4
naive thymus-derived CD8-positive, alpha-beta T cell
4
nephron progenitor
4
neuroblastoma cell line
4
omental fat pad
4
osteoblast
4
pancreatic delta cell
4
skeletal muscle tissue
4
squamous cell lung carcinoma
4
testis
3
22Rv1
3
Adaptive / Maladaptive / Repairing Fibroblast
3
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
3
Afferent / Efferent Arteriole Endothelial Cell
3
Ammon's horn
3
B Cell
3
CD4-positive helper T cell
3
CD4-positive, alpha-beta T cell
3
Classical Dendritic Cell
3
Connecting Tubule Cell
3
Connecting Tubule Intercalated Cell Type A
3
Connecting Tubule Principal Cell
3
Cortical Thick Ascending Limb Cell
3
Cycling Endothelial Cell
3
Cycling Epithelial Cell
3
Cycling Mononuclear Phagocyte
3
Cycling T Cell
3
Cytotoxic T Cell
3
Degenerative Connecting Tubule Cell
3
Degenerative Connecting Tubule Cell / Principal Cell
3
Degenerative Cortical Thick Ascending Limb Cell
3
Degenerative Distal Convoluted Tubule Cell
3
Degenerative Intercalated Cell Type A
3
Degenerative Peritubular Capillary Endothelial Cell
3
Degenerative Principal Cell
3
Degenerative Proximal Tubule Epithelial Cell
3
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
3
Degenerative Vascular Smooth Muscle Cell
3
Descending Thin Limb Cell Type 1
3
Distal Convoluted Tubule Cell Type 1
3
Ewing sarcoma
3
Fibroblast
3
GM18507
3
GM19238
3
GM19239
3
GM19240
3
Glomerular Capillary Endothelial Cell
3
H7-hESC
3
HAP-1
3
HCT116
3
HT-29
3
IMR-90
3
Intercalated Cell Type A
3
Intercalated Cell Type B
3
KARPAS-422 cell
3
LoVo cell
3
Lymphatic Endothelial Cell
3
M2 Macrophage
3
MM.1S
3
Mast Cell
3
Medullary Thick Ascending Limb Cell
3
Mesangial Cell
3
Monocyte
3
Monocyte-derived Cell
3
Myofibroblast
3
NAMALWA cell
3
Natural Killer T Cell
3
Natural Killer T Cell Type 1
3
Natural Killer T Cell Type 2
Date released
2
February, 2021
1
March, 2020
1
May, 2021
Software used
2
macs
1
nospecificsoft_customcode
1
r
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
biosample_term_name!
aorta
Showing 4 of 4 results
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Download
FileSet
DSR740DPX
released
Annotation file set
: Gene expression annotation of embryonic stem cell Undifferentiated ES cell from embryonic stem cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR927IPU
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell Expanded_potential_stem_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR134CON
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell Embryonic_Stem_Cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR929DUM
released
Annotation file set
: A target gene prediction annotation in Human Human ES Cells of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP