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Schema
Citing CMDGA
Clear Filters
Annotation type
3
binding sites
2
histone modifications
1
accessible chromatin
1
target gene predictions
Annotation Category
6
cis-regulatory elements
1
Target gene links
Annotation type Category
5
ChIP-seq
1
ATAC-seq
1
pCHi-C
Available data
6
bed bed3+
File set status
7
released
Genome assembly (visualization)
6
hg19
Organism
7
Homo sapiens
Biosample type
4
in vitro differentiated cells
3
cell line
Biosample term
87
heart
83
stomach
74
kidney
72
brain
67
lung
67
muscle of arm
63
HeLa-S3
62
small intestine
61
A549
59
adrenal gland
59
placenta
57
muscle of leg
55
large intestine
54
muscle of back
53
common myeloid progenitor, CD34-positive
52
left lung
47
liver
47
thymus
45
H1-hESC
45
right lung
44
neural progenitor cell
42
hematopoietic multipotent progenitor cell
42
right kidney
41
B cell
40
K562
40
renal cortex interstitium
40
renal pelvis
39
retina
36
left kidney
34
spinal cord
33
heart left ventricle
33
islet of Langerhans
32
CD4-positive, alpha-beta memory T cell
32
fibroblast
31
endothelial cell
31
spleen
29
macrophage
28
adipose tissue
25
MCF-7
23
hepatocyte
23
smooth muscle cell
23
tibial nerve
22
CD8-positive, alpha-beta memory T cell
22
T cell
22
foreskin keratinocyte
22
pericyte cell
22
sigmoid colon
21
body of pancreas
21
caudate nucleus
21
pancreas
21
regulatory T cell
20
adipocyte
20
breast cancer cell
20
keratinocyte
20
mononuclear cell
20
natural killer cell
20
pigmented layer of retina
20
trophoblast cell
19
psoas muscle
18
HFFc6
18
coronary artery
18
endothelial cell of umbilical vein
18
foreskin fibroblast
18
heart right ventricle
18
ovary
18
pancreatic ductal cell
17
gastrocnemius medialis
17
mesenchymal stem cell
17
right atrium auricular region
17
thyroid gland
17
tibial artery
17
transverse colon
16
CD14-positive monocyte
16
CD8-positive, alpha-beta T cell
HepG2
16
cardiac muscle cell
16
chorionic villus
16
fibroblast of cardiac tissue
16
layer of hippocampus
16
muscle of trunk
16
retinal pigment epithelial cell
16
subcutaneous adipose tissue
16
substantia nigra
16
testis
16
upper lobe of left lung
15
CD4-positive, alpha-beta T cell
15
T-helper 1 cell
15
fibroblast of lung
15
mammary gland epithelial cell
15
omental fat pad
15
pancreatic beta cell
15
skeletal muscle tissue
14
GM12878
14
T-helper 17 cell
14
T-helper 2 cell
14
ascending aorta
14
astrocyte
14
endocrine pancreas
14
prostate gland
14
putamen
14
skeletal muscle myoblast
13
H9
13
Peyer's patch
13
bronchial epithelial cell
13
cerebellum
13
neurosphere
13
osteoblast
13
pancreatic alpha cell
12
aorta
12
excitatory neuron
12
frontal cortex
12
left renal cortex interstitium
12
lymphoblastoid cell line
12
monocyte
12
neuroblastoma cell
12
pancreatic acinar cell
12
pancreatic delta cell
11
Ammon's horn
11
endothelial cell of hepatic sinusoid
11
fibroblast of dermis
11
left renal pelvis
11
mammary epithelial cell
11
right renal pelvis
11
skeletal muscle satellite cell
11
temporal lobe
10
22Rv1
10
Rhabdomyosarcoma
10
breast epithelium
10
choroid plexus epithelial cell
10
epithelial cell of prostate
10
esophagus muscularis mucosa
10
esophagus squamous epithelium
10
gastric cancer cell
10
left cardiac atrium
10
lymphocyte
10
neutrophil
10
right renal cortex interstitium
10
skin fibroblast
10
thoracic aorta
10
trophoblast
9
SK-N-DZ
9
colonic mucosa
9
diffuse intrinsic pontine glioma
9
erythroblast
9
esophagus
9
hepatic stellate cell
9
kidney tubule cell
9
liposarcoma
9
neuronal stem cell
9
parathyroid adenoma
9
tongue
8
B-lymphoblastoid cell line
8
GM12865
8
HEK293
8
NAMALWA cell
8
cingulate gyrus
8
colon epithelial cell
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
endodermal cell
8
fibroblast cell line
8
globus pallidus
8
immortal human breast epithelial cell line cell
8
limb
8
lower leg skin
8
myoepithelial cell of mammary gland
8
naive T cell
8
vagina
7
AG04449 cell
7
AG04450 cell
7
AG09309 cell
7
AG09319 cell
7
AG10803 cell
7
BE(2)-C
7
BJ cell
7
CD1c-positive myeloid dendritic cell
7
CMK
7
Caco-2 cell
7
GM06990
7
GM12864
7
HT-29
7
IMR-90
7
SK-N-MC
7
SK-N-SH
7
T47D
7
WERI-Rb-1
7
angular gyrus
7
chorion membrane
7
dermis lymphatic vessel endothelial cell
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
eye
7
fibroblast of pulmonary artery
7
foreskin melanocyte
7
mature neutrophil
7
mesendoderm
7
right lobe of liver
7
stomach smooth muscle
6
Brodmann (1909) area 46
6
Chondroid Chordoma
Date released
May, 2021
5
February, 2021
1
March, 2020
1
November, 2022
Software used
6
macs
1
nospecificsoft_customcode
Lab
6
AMP-T2D consortium
1
Struan F.A. Grant, CHOP
Project
7
AMP
RFA
6
AMP
1
AMP2
biosample_term_name!
HepG2
annotation_type!
gene expression
month_released!
May, 2021
Showing 7 of 7 results
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Download
FileSet
DSR455VRI
released
Annotation file set
: Accessible chromatin of an established embryonic stem cell derived hypothalamic-like neuron model across three stages of in vitro differentiation (Embryonic Stem Cell).
Lab:
Struan F.A. Grant, CHOP
Project:
AMP
FileSet
DSR927IPU
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell Expanded_potential_stem_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR134CON
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell Embryonic_Stem_Cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR161DPJ
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell KhES-3 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR084KAX
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_VAL-3 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR026FET
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell Embryonic_Stem_Cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR929DUM
released
Annotation file set
: A target gene prediction annotation in Human Human ES Cells of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP