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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
1
target gene predictions
1
variant allelic effects
Annotation Category
2
cis-regulatory elements
1
Genetic variant effects
1
Target gene links
Annotation type Category
3
snATAC-seq
1
ATAC-seq
Available data
4
bed bed3+
4
bigWig
3
bigBed narrowPeak
1
tsv
File set status
4
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
86
monocyte
39
A549
30
common myeloid progenitor, CD34-positive
26
hematopoietic multipotent progenitor cell
21
retina
20
pigmented layer of retina
18
CD8-positive, alpha-beta T cell
18
adrenal gland
17
B cell
16
liver
16
stomach
15
spleen
14
MCF-7
14
adipose tissue
13
K562
12
body of pancreas
12
gastrocnemius medialis
12
pancreas
12
sigmoid colon
12
thyroid gland
12
transverse colon
11
heart left ventricle
11
tibial nerve
10
CD8-positive, alpha-beta memory T cell
10
Peyer's patch
10
endothelial cell of hepatic sinusoid
10
mononuclear cell
10
upper lobe of left lung
9
CD14-positive monocyte
9
caudate nucleus
9
endocrine pancreas
9
layer of hippocampus
9
natural killer cell
9
omental fat pad
9
ovary
9
psoas muscle
8
HeLa-S3
8
esophagus squamous epithelium
8
islet of Langerhans
8
lower leg skin
7
T cell
7
aorta
7
ascending aorta
7
breast epithelium
7
esophagus muscularis mucosa
7
parathyroid adenoma
7
substantia nigra
7
temporal lobe
6
CD4-positive, alpha-beta memory T cell
6
T-helper 1 cell
6
angular gyrus
6
cerebellum
6
cingulate gyrus
6
colonic mucosa
6
coronary artery
6
duodenal mucosa
6
endometrium adenocarcinoma
6
esophagus
6
fibroblast of breast
6
gastroesophageal sphincter
6
immortal human breast epithelial cell line cell
6
kidney
6
kidney tubule cell
6
mucosa of rectum
6
muscle layer of colon
6
muscle layer of duodenum
6
myoepithelial cell of mammary gland
6
prostate gland
6
right atrium auricular region
6
skeletal muscle tissue
6
small intestine
6
stomach smooth muscle
6
testis
6
thoracic aorta
6
tibial artery
6
vagina
5
CD4-positive, alpha-beta T cell
5
LNCaP clone FGC
5
T-helper 2 cell
5
T47D
5
frontal cortex
5
hepatocyte
5
regulatory T cell
5
subcutaneous abdominal adipose tissue
4
Ammon's horn
4
Brodmann (1909) area 46
4
GM12878
4
cerebellar cortex
4
dermis blood vessel endothelial cell
4
fibroblast of lung
4
globus pallidus
4
glutamatergic neuron
4
heart right ventricle
4
kidney glomerular epithelial cell
4
lung
4
mammary gland epithelial cell
4
middle frontal gyrus
4
muscle cell
4
naive T cell
4
pancreatic alpha cell
4
pancreatic beta cell
4
peripheral blood mononuclear cell
4
putamen
4
subcutaneous adipose tissue
4
uterus
3
A172
3
ACC112
3
ACHN
3
C4-2B
3
Caki2
3
DOHH2
3
GM04503
3
GM04504
3
GM23248
3
GM23338
3
H4
3
H54
3
HAP-1
3
HCT116
3
HL-60
3
HS-27A
3
HS-5
3
HT-29
3
HT1080
3
KBM-7
3
KMS-11
3
LHCN-M2
3
Loucy
3
M059J
3
MCF 10A
3
MM.1S
3
NB4
3
NCI-H929
3
OCI-LY1
3
OCI-LY3
3
OCI-LY7
3
PC-3
3
RCC 7860
3
RPMI7951
3
RPMI8226
3
RWPE1
3
RWPE2
3
SJSA1
3
SK-MEL-5
3
SU-DHL-6
3
SW480
3
adipocyte
3
bipolar neuron
3
fibroblast of dermis
3
heart
3
hepatic stellate cell
3
iPS-11a
3
iPS-15b
3
iPS-18a
3
iPS-18c
3
iPS-20b
3
medulla oblongata
3
mesenchymal stem cell
3
midbrain
3
mucosa of stomach
3
naive thymus-derived CD4-positive, alpha-beta T cell
3
occipital lobe
3
pancreatic delta cell
3
pons
3
right cardiac atrium
3
right lobe of liver
3
skeletal muscle myoblast
3
skeletal muscle satellite cell
3
superior temporal gyrus
3
suprapubic skin
3
urinary bladder
2
cardiac fibroblast
2
8988T
2
AG08395 cell
2
AG08396 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803
2
AG10803 cell
2
AG20443
2
COLO829
2
Caco-2 cell
2
GM10248
2
GM10266
2
GM12875
2
GM19238
2
GM19239
2
GM19240
2
HPDE6-E6E7
2
HuH-7
2
HuH-7.5
2
KARPAS-422 cell
2
LNCAP
2
LoVo cell
2
NCI-H226 cell
2
T-cell
2
VCaP cell
2
cardiomyocytes (cardiac muscle cell)
2
endothelial cell
2
fibroblast
Organ
4
epithelium
4
pancreas
Life stage
4
adult
1
newborn
1
unknown
Date released
2
February, 2024
1
February, 2021
1
October, 2019
Software used
2
macs
1
cicero
1
deltasvm
Lab
3
Kyle Gaulton, UCSD
1
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
Showing 4 of 4 results
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Download
FileSet
DSR616QUT
released
Annotation file set
: Pancreatic beta cell accessible chromatin annotation of overlapping ATAC-seq sites from 5 samples with most significant peak selected
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR376KYK
released
Annotation file set
: pancreatic beta cell co-accessibility linking chromatin sites to gene promoters annotation from snATAC
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR450SMN
released
Annotation file set
: Genetic variants with deltaSVM predictions in pancreatic beta cell snATAC-seq
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR373LDZ
released
Annotation file set
: pancreatic beta cell accessible chromatin annotation from snATAC
Lab:
Kyle Gaulton, UCSD
Project:
AMP