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Schema
Citing CMDGA
Clear Filters
Annotation type
7
chromatin state
1
accessible chromatin
Annotation Category
8
cis-regulatory elements
Gene expression levels
Annotation type Category
7
ChIP-seq
1
ATAC-seq
Available data
bed bed3+
7
bed bed9
5
bigBed bed9
1
bigWig
File set status
8
released
Genome assembly (visualization)
7
hg19
2
GRCh38
Organism
8
Homo sapiens
Biosample type
6
in vitro differentiated cells
2
tissue
Biosample term
21
heart
20
brain
20
stomach
18
A549
17
islet of Langerhans
17
lung
16
kidney
16
muscle of arm
16
small intestine
15
adrenal gland
15
liver
15
muscle of leg
15
placenta
13
common myeloid progenitor, CD34-positive
13
large intestine
13
left lung
13
muscle of back
11
right kidney
11
right lung
11
thymus
10
hematopoietic multipotent progenitor cell
9
CD4-positive, alpha-beta memory T cell
9
adipose tissue
9
caudate nucleus
9
heart left ventricle
9
left kidney
9
renal cortex interstitium
9
renal pelvis
9
tibial nerve
8
B cell
8
body of pancreas
8
coronary artery
8
putamen
8
spinal cord
8
subcutaneous adipose tissue
8
substantia nigra
8
tibial artery
7
CD8-positive, alpha-beta memory T cell
7
ascending aorta
7
cerebellum
7
frontal cortex
7
macrophage
7
mature neutrophil
7
omental fat pad
7
right atrium auricular region
7
spleen
6
K562
6
T cell
6
embryonic stem cell
6
lymphoblastoid cell line
6
monocyte
6
mononuclear cell
6
neutrophil
5
Ammon's horn
5
CD14-positive, CD16-negative classical monocyte
5
MCF-7
5
amygdala
5
anterior cingulate cortex
5
endothelial cell of umbilical vein
5
heart right ventricle
5
hypothalamus
5
neural progenitor cell
5
nucleus accumbens
5
ovary
5
regulatory T cell
5
right lobe of liver
5
sigmoid colon
5
skeletal muscle tissue
5
thyroid gland
5
transverse colon
5
trophoblast cell
4
C1 segment of cervical spinal cord
4
CD14-positive monocyte
4
T-helper 1 cell
4
T-helper 17 cell
4
T-helper 2 cell
4
alternatively activated macrophage
4
angular gyrus
4
aorta
4
cerebellum (Hemisphere)
4
chorionic villus
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
endocrine pancreas
4
foreskin keratinocyte
4
gastrocnemius medialis
4
gastrocnemius medialis(Muscle - Skeletal)
4
layer of hippocampus
4
left ventricle myocardium
4
muscle of trunk
4
naive thymus-derived CD4-positive, alpha-beta T cell
4
natural killer cell
4
psoas muscle
4
retina
4
skin of body
4
temporal lobe
4
testis
3
CD4-positive, alpha-beta T cell
3
HeLa-S3
3
Peyer's patch
3
blood cell
3
cartilage tissue
3
chorion membrane
3
endometrium adenocarcinoma
3
esophagus
3
esophagus muscularis mucosa
3
fibroblast of cardiac tissue
3
fibroblast of dermis
3
fibroblast of lung
3
immortal human breast epithelial cell line cell
3
inflammatory macrophage
3
left renal cortex interstitium
3
mammary gland epithelial cell
3
mesenchymal stem cell
3
naive T cell
3
neurosphere
3
pancreas
3
prostate gland
3
right cardiac atrium
3
right renal cortex interstitium
3
skeletal muscle myoblast
3
thoracic aorta
3
upper lobe of left lung
3
vagina
2
22Rv1
2
Brodmann (1909) area 46
2
KARPAS-422 cell
2
LNCaP clone FGC
2
NAMALWA cell
2
SK-N-DZ
2
SK-N-SH
2
T47D
2
adipocyte
2
adipose-derived stem cell
2
articular chondrocyte
2
blood
2
breast epithelium
2
bronchial epithelial cell
2
cingulate gyrus
2
colonic mucosa
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
differentiating adipose-derived stem cell
2
duodenal mucosa
2
endodermal cell
2
epithelial cell of prostate
2
erythroblast
2
esophagus squamous epithelium
2
eye
2
fibroblast
2
fibroblast of breast
2
foreskin fibroblast
2
germinal matrix
2
globus pallidus
2
glomerular endothelial cell
2
hepatic stellate cell
2
hepatocyte
2
iPSC derived cell line
2
keratinocyte
2
kidney capillary endothelial cell
2
kidney glomerular epithelial cell
2
kidney tubule cell
2
left renal pelvis
2
limb
2
lower leg skin
2
medulla oblongata
2
midbrain
2
middle frontal gyrus
2
mucosa of rectum
2
muscle
2
muscle cell
2
muscle layer of colon
2
muscle layer of duodenum
2
myoepithelial cell of mammary gland
2
parathyroid adenoma
2
pons
2
right renal pelvis
2
skeletal muscle satellite cell
2
skin fibroblast
2
stomach smooth muscle
2
superior temporal gyrus
2
tongue
2
trophoblast
2
urinary bladder
2
uterus
1
8988T
1
A172
1
A673
1
ACC112
1
ACHN
1
AG04449 cell
1
AG04450 cell
1
AG08395 cell
1
AG08396 cell
1
AG09309 cell
1
AG09319 cell
1
AG10803 cell
1
AG20443
1
BE(2)-C
1
BJ cell
1
BL-2 cell
Organ
2
kidney
2
ureter
Life stage
2
embryonic
Date released
5
May, 2021
2
September, 2022
1
November, 2022
Software used
7
chromhmm
1
macs
Lab
7
AMP-T2D consortium
1
Struan F.A. Grant, CHOP
Project
8
AMP
RFA
7
AMP
1
AMP2
files.file_type!
bed bed3+
annotation_category!
Gene expression levels
Showing 8 of 8 results
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Download
FileSet
DSR455VRI
released
Annotation file set
: Accessible chromatin of an established embryonic stem cell derived hypothalamic-like neuron model across three stages of in vitro differentiation (Embryonic Stem Cell).
Lab:
Struan F.A. Grant, CHOP
Project:
AMP
FileSet
DSR297LBE
released
Annotation file set
: Chromatin states for BSS01534 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR581FPM
released
Annotation file set
: Chromatin states for BSS01533 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR103NWH
released
Annotation file set
: Chromatin state of differentiated hESCs from GSE149148 at developmental stage Late pancreatic progenitor cells
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR146BON
released
Annotation file set
: Chromatin state of differentiated hESCs from GSE149148 at developmental stage Early pancreatic progenitor cells
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR622ZAP
released
Annotation file set
: Chromatin state of differentiated hESCs from GSE149148 at developmental stage Gut tube cells
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR148OGH
released
Annotation file set
: Chromatin state of differentiated hESCs from GSE149148 at developmental stage Embyonic stem cells
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR044ECG
released
Annotation file set
: Chromatin state of differentiated hESCs from GSE149148 at developmental stage Definitive endoderm cells
Lab:
AMP-T2D consortium
Project:
AMP