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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
6
accessible chromatin
1
target gene predictions
Annotation Category
6
cis-regulatory elements
1
Target gene links
Annotation type Category
ChIP-seq
6
ATAC-seq
1
pCHi-C
Available data
6
bed bed3+
File set status
7
released
Genome assembly (visualization)
6
hg19
Organism
7
Homo sapiens
Biosample type
7
in vitro differentiated cells
primary cell
Biosample term
52
HeLa-S3
47
H1-hESC
38
islet of Langerhans
26
retina
21
EndoC_BH1
20
pigmented layer of retina
19
HFFc6
19
kidney
18
K562
18
neural progenitor cell
18
subcutaneous adipose tissue
17
induced pluripotent stem cell
17
liver
13
coronary artery
12
adipose tissue
12
right atrium auricular region
12
tibial nerve
11
cardiomyocytes
11
heart
11
tibial artery
10
frontal cortex
10
pancreas
10
pituitary stalk
10
putamen
9
adipocyte
9
caudate nucleus
9
extended pluripotent stem (EPS) cells
9
heart left ventricle
9
omental fat pad
9
progenitor cell of endocrine pancreas
8
Ammon's horn
8
GM12878
8
body of pancreas
8
cardiomyocytes (cardiac muscle cell)
8
cerebellum
7
H9
7
ascending aorta
7
embryonic stem cell
7
lymphoblastoid cell line
7
stomach
7
substantia nigra
6
SGBS preadipocytes
6
adrenal gland
6
amygdala
6
anterior cingulate cortex
6
brain
6
cardiac precursors (cardiac muscle cell)
6
cerebellum (Hemisphere)
6
dendritic cell
6
hypothalamus
6
iPSC derived cell line
6
lymphocyte
6
nucleus accumbens
6
retinal pigment epithelial cell
6
spleen
5
C1 segment of cervical spinal cord
5
HUES8
5
chondrocyte
5
gastrocnemius medialis(Muscle - Skeletal)
5
heart right ventricle
5
left ventricle myocardium
5
ovary
5
pancreatic ductal cell
5
psoas muscle
5
right lobe of liver
4
CyT49
4
HepG2
4
Pancreatic progenitors (progenitor cell of endocrine pancreas)
4
bone tissue
4
cartilage tissue
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
occipital lobe
4
small intestine
4
spinal cord
4
thymus
4
uterus
4
visceral abdominal adipose tissue
3
Jurkat
3
U937
3
aorta
3
dorsolateral prefrontal cortex
3
globus pallidus
3
hepatocyte(AFP)
3
left cardiac atrium
3
lung
3
medulla oblongata
3
mesenchymal stem cell
3
mesendoderm
3
midbrain
3
muscle of leg
3
placenta
3
pons
3
renal pelvis
3
sigmoid colon
3
skeletal muscle tissue
3
skin of body
3
superior temporal gyrus
3
testis
3
thyroid gland
3
transverse colon
2
hindlimb muscle
2
muscle of leg
2
A549
2
B cell
2
BJAB cell
2
GM18507
2
GM19240
2
H7-hESC
2
HAP-1
2
HCT-116 cell
2
HCT116
2
HT-29
2
IMR-90
2
KARPAS-422 cell
2
LNCAP
2
LoVo cell
2
MCF 10A cell
2
MCF-7
2
MDA-MB-231 cell
2
MIN6
2
MM.1S
2
NCCIT cell
2
OCI-LY7
2
PC-9
2
Rh-4 cell
2
THP-1
2
adipose-derived stem cell
2
bipolar neuron
2
blood
2
breast epithelium
2
cortex of kidney
2
differentiating adipose-derived stem cell
2
endothelial cell
2
esophagus
2
esophagus muscularis mucosa
2
excitatory neuron
2
fibroblast cell line
2
fibroblast of cardiac tissue
2
gastrocnemius medialis
2
glomerular visceral epithelial cell
2
hematopoietic multipotent progenitor cell
2
hippocampal neuron
2
large intestine
2
left renal cortex interstitium
2
left renal pelvis
2
lower motor neuron
2
lymphocyte of B lineage (iPSC)
2
macrophage
2
middle frontal gyrus
2
minor salivary gland
2
muscle
2
muscle of arm
2
neuronal stem cell
2
pancreatic stellate cell
2
prostate gland
2
renal cortex interstitium
2
right cardiac atrium
2
right kidney
2
right renal cortex interstitium
2
right renal pelvis
2
smooth muscle cell of the coronary artery
2
thoracic aorta
2
tissue
2
trophoblast
2
vagina
1
left kidney
1
omental fat pad
1
786-O cell
1
A-673 cell
1
A172
1
A673
1
ACHN
1
AG04449 cell
1
AG04450 cell
1
AG08396 cell
1
AG09309 cell
1
AG09319 cell
1
AG10803 cell
1
Adipose SGBS cell line (adipocyte)
1
B-lymphoblastoid cell line
1
BE(2)-C
1
BJ cell
1
CD4-positive helper T cell
1
CD8-positive, alpha-beta T cell
1
CMK
1
COLO-829 cell
1
COLO205
1
Caco-2 cell
1
Caki2
1
D341 Med cell
1
DG-75 cell
1
Daoy
1
ECC-1
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
G-401 cell
1
GM03348
1
GM04503
1
GM04504
1
GM06990
Date released
5
May, 2021
1
March, 2020
1
November, 2022
Software used
6
macs
1
nospecificsoft_customcode
Lab
6
AMP-T2D consortium
1
Struan F.A. Grant, CHOP
Project
7
AMP
RFA
6
AMP
1
AMP2
biosample_type!
primary cell
annotation_type_category!
ChIP-seq
Showing 7 of 7 results
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Download
FileSet
DSR455VRI
released
Annotation file set
: Accessible chromatin of an established embryonic stem cell derived hypothalamic-like neuron model across three stages of in vitro differentiation (Embryonic Stem Cell).
Lab:
Struan F.A. Grant, CHOP
Project:
AMP
FileSet
DSR995THT
released
Annotation file set
: Accessible chromatin of differentiated hESCs from GSE149148 at developmental stage Late pancreatic progenitor cells
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR305VKL
released
Annotation file set
: Accessible chromatin of differentiated hESCs from GSE149148 at developmental stage Early pancreatic progenitor cells
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR323EMN
released
Annotation file set
: Accessible chromatin of differentiated hESCs from GSE149148 at developmental stage Gut tube cells
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR838FNO
released
Annotation file set
: Accessible chromatin of differentiated hESCs from GSE149148 at developmental stage Embyonic stem cells
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR661PJZ
released
Annotation file set
: Accessible chromatin of differentiated hESCs from GSE149148 at developmental stage Definitive endoderm cells
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR929DUM
released
Annotation file set
: A target gene prediction annotation in Human Human ES Cells of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP