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Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
target gene predictions
Annotation Category
1
Target gene links
1
cis-regulatory elements
Annotation type Category
2
ATAC-seq
1
DNase-seq
1
H3K27ac ChIP-Seq
Available data
1
bed bed3+
File set status
2
released
Genome assembly (visualization)
1
hg19
Organism
2
Homo sapiens
Biosample type
1
cell line
1
in vitro differentiated cells
Biosample term
15
kidney
10
pituitary stalk
8
adipocyte
8
induced pluripotent stem cell
6
dendritic cell
5
left cardiac atrium
4
cartilage tissue
4
liver
3
islet of Langerhans
3
subcutaneous adipose tissue
2
BJAB cell
2
ESC derived cell line
2
EndoC_BH1
2
GM12878
2
H1-hESC
2
HepG2
2
Jurkat
2
K562
2
MCF 10A cell
2
THP-1
2
U937
2
adrenal gland
2
pancreatic ductal cell
2
pancreatic stellate cell
2
stomach
1
A549
1
A673
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
H7-hESC
1
H9
1
HAP-1
1
HCT-116 cell
1
HT-29
1
HeLa-S3
1
Human Mesenchymal Cell derived Adipocytes
1
Human Mesenchymal Cell derived Osteoblasts
1
IMR-90
1
KARPAS-422 cell
1
LNCAP
1
LoVo cell
1
MCF-7
1
MDA-MB-231 cell
1
MM.1S
1
NCCIT cell
1
OCI-LY7
1
PC-9
1
Panc1
1
Pancreatic islets
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
SK-N-SH
1
Schwann cell
1
adipose tissue
1
beige adipocyte
1
bipolar neuron
1
body of pancreas
1
breast epithelium
1
cardiac ventricle
1
caudate nucleus
1
cingulate gyrus
1
colonic mucosa
1
coronary artery
1
duodenal mucosa
1
embryonic stem cell
1
endothelial cell
1
gastrocnemius medialis
1
iPS DF 19.11
1
large intestine
1
layer of hippocampus
1
macrophage
1
mesenchymal stem cell
1
mesendoderm
1
mid-frontal lobe
1
monocyte
1
mucosa of rectum
1
muscle of leg
1
muscle of trunk
1
myotube
1
neuron cell of Hypothalamus (neuron)
1
neuronal stem cell
1
ovary
1
pancreas
1
pancreatic A cell
1
pancreatic D cell
1
pancreatic PP cell
1
pancreatic acinar cell
1
placenta
1
psoas muscle
1
purified protein and synthetic DNA oligo binding assay
1
rectum smooth muscle tissue
1
sigmoid colon
1
skeletal muscle
1
skeletal muscle myoblast
1
small intestine
1
spinal cord
1
spleen
1
stomach smooth muscle
1
substantia nigra
1
synovial joint
1
temporal lobe
1
thymus
1
thyroid gland
1
tissue-resident macrophage
1
transverse colon
1
trophoblast cell
1
type B pancreatic cell
1
undifferentiated ESC (H9 cell line)
1
uterus
1
white adipose tissue
Organ
1
intestine
1
large intestine
Date released
1
May, 2021
1
November, 2022
Software used
1
abc
1
macs
Lab
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
1
Struan F.A. Grant, CHOP
Project
2
AMP
RFA
1
AMP
1
AMP2
biosample_type!
primary cell
lab.title!
AMP-T2D consortium
Showing 2 of 2 results
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Download
FileSet
DSR455VRI
released
Annotation file set
: Accessible chromatin of an established embryonic stem cell derived hypothalamic-like neuron model across three stages of in vitro differentiation (Embryonic Stem Cell).
Lab:
Struan F.A. Grant, CHOP
Project:
AMP
FileSet
DSR355NCA
released
Annotation file set
: enhancer-gene predicton of HCT116-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP