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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
10
gene expression
6
accessible chromatin
2
binding sites
2
caQTL
2
variant allelic effects
1
eQTL
1
histone modifications
1
target gene predictions
Annotation Category
6
cis-regulatory elements
1
Target gene links
Annotation type Category
5
snATAC-seq
1
ATAC-seq
Available data
7
bed bed3+
4
bigWig
File set status
7
released
Genome assembly (visualization)
7
hg19
2
GRCh38
Organism
7
Homo sapiens
Biosample type
6
primary cell
1
tissue
Biosample term
55
HeLa-S3
40
H1-hESC
26
retina
25
heart
24
K562
24
kidney
24
stomach
21
monocyte
20
A549
20
pigmented layer of retina
19
CD14-positive monocyte
19
HFFc6
18
adrenal gland
18
brain
18
small intestine
17
lung
17
muscle of arm
16
muscle of leg
16
placenta
15
B cell
15
large intestine
15
neural progenitor cell
15
thymus
14
common myeloid progenitor, CD34-positive
14
liver
13
left lung
13
muscle of back
12
right lung
11
adipocyte
11
hematopoietic multipotent progenitor cell
11
renal pelvis
11
right kidney
10
adipose tissue
10
heart left ventricle
10
hepatocyte
10
pancreas
10
pituitary stalk
10
renal cortex interstitium
10
spinal cord
10
spleen
9
CD4-positive, alpha-beta memory T cell
9
EndoC_BH1
9
GM12878
9
left kidney
9
natural killer cell
9
pancreatic beta cell
9
psoas muscle
9
regulatory T cell
9
retinal pigment epithelial cell
8
CD8-positive, alpha-beta T cell
8
H9
8
pancreatic alpha cell
8
pancreatic ductal cell
8
sigmoid colon
8
trophoblast cell
7
CD8-positive, alpha-beta memory T cell
7
MCF-7
7
T cell
7
embryonic stem cell
7
endothelial cell
7
islet of Langerhans
7
lymphocyte
7
macrophage
7
mesenchymal stem cell
7
osteoblast
7
ovary
7
pancreatic delta cell
6
SGBS preadipocytes
6
T-helper 1 cell
6
coronary artery
6
dendritic cell
6
endothelial cell of umbilical vein
6
gastrocnemius medialis
6
heart right ventricle
6
mononuclear cell
6
olfactory receptor cell
6
pancreatic acinar cell
6
thyroid gland
6
tibial nerve
6
transverse colon
5
HUES8
5
HepG2
5
T-helper 17 cell
5
T-helper 2 cell
5
body of pancreas
5
caudate nucleus
5
chondrocyte
5
fibroblast of cardiac tissue
5
foreskin keratinocyte
5
muscle of trunk
5
naive B cell
5
naive thymus-derived CD8-positive, alpha-beta T cell
5
pancreatic stellate cell
5
right atrium auricular region
5
skeletal muscle myoblast
5
tibial artery
4
Ammon's horn
4
CD4-positive helper T cell
4
CyT49
4
Peyer's patch
4
aorta
4
breast epithelium
4
cardiac muscle cell
4
chorion membrane
4
chorionic villus
4
endocrine pancreas
4
endothelial cell of hepatic sinusoid
4
epithelial cell of prostate
4
fibroblast of dermis
4
fibroblast of lung
4
foreskin fibroblast
4
frontal cortex
4
glomerular visceral epithelial cell
4
glutamatergic neuron
4
iPSC derived cell line
4
kidney tubule cell
4
mammary gland epithelial cell
4
memory B cell
4
mesendoderm
4
omental fat pad
4
skin fibroblast
4
smooth muscle cell
4
testis
4
trophoblast
4
upper lobe of left lung
3
cardiac fibroblast
3
GM18507
3
GM19240
3
H7-hESC
3
HAP-1
3
HCT116
3
HT-29
3
IMR-90
3
Jurkat
3
KARPAS-422 cell
3
LoVo cell
3
MM.1S
3
NAMALWA cell
3
OCI-LY7
3
PC-9
3
SK-N-DZ
3
SK-N-SH
3
U937
3
activated CD4-positive, alpha-beta T cell
3
ascending aorta
3
astrocyte
3
bipolar neuron
3
bronchial epithelial cell
3
cardiomyocytes (cardiac muscle cell)
3
cerebellum
3
choroid plexus epithelial cell
3
endometrium adenocarcinoma
3
esophagus
3
esophagus muscularis mucosa
3
esophagus squamous epithelium
3
eye
3
globus pallidus
3
glomerular endothelial cell
3
hepatic stellate cell
3
immortal human breast epithelial cell line cell
3
keratinocyte
3
kidney glomerular epithelial cell
3
layer of hippocampus
3
left renal cortex interstitium
3
left renal pelvis
3
limb
3
medulla oblongata
3
megakaryocyte
3
midbrain
3
naive T cell
3
naive thymus-derived CD4-positive, alpha-beta T cell
3
neurosphere
3
neutrophil
3
occipital lobe
3
pancreatic polypeptide-secreting cell
3
plasmacytoid dendritic cell
3
pons
3
prostate gland
3
putamen
3
renal cortical epithelial cell
3
right renal cortex interstitium
3
right renal pelvis
3
skeletal muscle satellite cell
3
skeletal muscle tissue
3
superior temporal gyrus
3
thoracic aorta
3
tongue
3
urinary bladder
3
uterus
2
22Rv1
2
A172
2
A673
2
ACHN
2
AG04449 cell
2
AG04450 cell
2
AG08396 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803 cell
2
BE(2)-C
Organ
7
epithelium
Life stage
2
adult
1
unknown
Date released
2
February, 2024
2
January, 2021
2
May, 2022
1
August, 2021
Software used
6
macs
1
cicero
Lab
3
Kyle Gaulton, UCSD
1
AMP-T2D consortium
1
Bing Ren, UCSD
1
Katalin Susztak, Upenn
1
Stephen Parker, UMich
Project
5
AMP
2
T1D
RFA
ENCODE3
3
AMP2
2
AMP
2
T1D
award.rfa!
ENCODE3
Showing 7 of 7 results
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Download
FileSet
DSR369PUU
released
Annotation file set
: accessible chromatin annotation from scATAC-seq of Endothelial
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR897TMQ
released
Annotation file set
: Accessible chromatin from snATAC-seq of endothelial cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR426RPD
released
Annotation file set
: Accessible chromatin annotation of Endothelial cells from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR493PXL
released
Annotation file set
: Accessible chromatin from Katalin Susztak 75kidney Project of Endothelial cells
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR264NGG
released
Annotation file set
: Cell type chromatin broad peaks and bw of endothelial cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR305VNP
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of endothelial
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR579LZJ
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of endothelial
Lab:
Kyle Gaulton, UCSD
Project:
T1D