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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
10
gene expression
6
accessible chromatin
2
binding sites
2
caQTL
2
variant allelic effects
1
eQTL
1
histone modifications
1
target gene predictions
Annotation Category
6
cis-regulatory elements
2
Genetic variant effects
Annotation type Category
6
snATAC-seq
1
ATAC-seq
Available data
8
bed bed3+
4
bigWig
File set status
8
released
Genome assembly (visualization)
8
hg19
2
GRCh38
Organism
8
Homo sapiens
Biosample type
7
primary cell
1
tissue
Biosample term
24
retina
20
pigmented layer of retina
18
monocyte
11
kidney
10
neural progenitor cell
9
EndoC_BH1
9
hepatocyte
8
endothelial cell
8
fibroblast
8
retinal pigment epithelial cell
7
heart
7
islet of Langerhans
7
macrophage
7
pancreatic beta cell
7
pancreatic ductal cell
6
SGBS preadipocytes
6
adipocyte
6
embryonic stem cell
6
pancreas
6
pancreatic alpha cell
5
cardiac fibroblast
5
B cell
5
T cell
5
chondrocyte
5
coronary artery
5
heart left ventricle
5
osteoblast
5
pancreatic acinar cell
5
pancreatic delta cell
5
regulatory T cell
5
right atrium auricular region
5
smooth muscle cell
5
tibial artery
5
tibial nerve
4
CD8-positive, alpha-beta T cell
4
Pancreatic progenitors (progenitor cell of endocrine pancreas)
4
cardiac muscle cell
4
endothelial cell of hepatic sinusoid
4
glomerular visceral epithelial cell
4
glutamatergic neuron
4
liver
4
myofibroblast cell
4
natural killer cell
4
pancreatic stellate cell
4
skeletal muscle fiber
3
Schwann cell
3
T-helper 1 cell
3
adipose tissue
3
basal cell
3
brain
3
brain pericyte
3
caudate nucleus
3
choroid plexus epithelial cell
3
endothelial cell of umbilical vein
3
enterocyte
3
frontal cortex
3
globus pallidus
3
glomerular endothelial cell
3
hepatic stellate cell
3
kidney glomerular epithelial cell
3
medulla oblongata
3
memory B cell
3
mesenchymal stem cell
3
midbrain
3
naive B cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
occipital lobe
3
pancreatic polypeptide-secreting cell
3
pons
3
putamen
3
renal cortical epithelial cell
3
renal pelvis
3
skeletal muscle myoblast
3
stomach
3
subcutaneous adipose tissue
3
superior temporal gyrus
2
hindlimb muscle
2
muscle of leg
2
Ammon's horn
2
CD4-positive helper T cell
2
HepG2
2
MIN6
2
Rh-4 cell
2
T follicular helper cell
2
T-helper 17 cell
2
T-helper 2 cell
2
acute myeloid leukemia cell
2
adipose-derived stem cell
2
aortic endothelial cell
2
ascending aorta
2
astrocyte of the cerebellum
2
astrocyte of the hippocampus
2
bone marrow cell
2
capillary endothelial cell
2
central memory CD8-positive, alpha-beta T cell
2
differentiating adipose-derived stem cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
epithelial cell of esophagus
2
epithelial cell of proximal tubule
2
erythroid cell
2
extracellular matrix secreting cell
2
fibroblast of cardiac tissue
2
gamma-delta T cell
2
goblet cell
2
heart right ventricle
2
kidney capillary endothelial cell
2
kidney epithelial cell
2
kidney tubule cell
2
left cardiac atrium
2
left renal cortex interstitium
2
left renal pelvis
2
leukocyte
2
mammary gland epithelial cell
2
mature natural killer cell
2
memory T cell
2
memory regulatory T cell
2
middle frontal gyrus
2
muscle of arm
2
muscle of leg
2
naive regulatory T cell
2
omental fat pad
2
plasmacytoid dendritic cell
2
renal cortex interstitium
2
right kidney
2
right renal cortex interstitium
2
right renal pelvis
2
skeletal muscle cell
2
skeletal muscle satellite cell
2
skin fibroblast
2
smooth muscle cell of the brain vasculature
2
spinal cord
2
spleen
2
thoracic aorta
2
type I muscle cell
2
type II muscle cell
2
type II pneumocyte
2
vascular associated smooth muscle cell
1
brain microvascular endothelial cell
1
left kidney
1
omental fat pad
1
retinal pigment epithelial cell
1
786-O cell
1
A-673 cell
1
A172
1
A549
1
ACHN
1
AG04449 cell
1
AG04450 cell
1
AG08396 cell
1
AG09309 cell
1
AG09319 cell
1
AG10803 cell
1
Adipose SGBS cell line (adipocyte)
1
B-Lymphocytes
1
B-lymphocyte
1
BE(2)-C
1
BJ cell
1
CD1c-positive myeloid dendritic cell
1
CD4-Positive T-Lymphocytes
1
CMK
1
COLO-829 cell
1
COLO205
1
Caco-2 cell
1
Caki2
1
D341 Med cell
1
DG-75 cell
1
Daoy
1
ECC-1
1
G-401 cell
1
GM03348
1
GM04503
1
GM04504
1
GM06990
1
GM10248
1
GM10266
1
GM12864
1
GM12865
1
GM12878
1
GM13976
1
GM13977
1
GM18507
1
GM19240
1
GM20000
1
GM23248
1
GP5d
1
Glioblastoma
1
H1-hESC
1
H4
1
H7-hESC
1
HAC cell
1
HAP-1
1
HBMEC cell
1
HCT-116 cell
1
HEK293
1
HGF
1
HL-60
1
HT-29
1
HUES6
Organ
8
epithelium
Life stage
2
adult
1
unknown
Date released
November, 2021
4
February, 2024
2
May, 2022
1
August, 2021
1
January, 2021
Software used
6
macs
2
deltasvm
Lab
3
Bing Ren, UCSD
2
Kyle Gaulton, UCSD
1
AMP-T2D consortium
1
Katalin Susztak, Upenn
1
Stephen Parker, UMich
Project
7
AMP
1
T1D
RFA
4
AMP
3
AMP2
1
T1D
month_released!
November, 2021
Showing 8 of 8 results
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Download
FileSet
DSR369PUU
released
Annotation file set
: accessible chromatin annotation from scATAC-seq of Endothelial
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR897TMQ
released
Annotation file set
: Accessible chromatin from snATAC-seq of endothelial cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR426RPD
released
Annotation file set
: Accessible chromatin annotation of Endothelial cells from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR493PXL
released
Annotation file set
: Accessible chromatin from Katalin Susztak 75kidney Project of Endothelial cells
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR264NGG
released
Annotation file set
: Cell type chromatin broad peaks and bw of endothelial cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR035TOY
released
Annotation file set
: Variant allelic effects annotation of Endothelial cells (sub-type2) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR772CSM
released
Annotation file set
: Variant allelic effects annotation of Endothelial cells from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR579LZJ
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of endothelial
Lab:
Kyle Gaulton, UCSD
Project:
T1D