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Schema
Citing CMDGA
Clear Filters
Annotation type
8
gene expression
3
accessible chromatin
2
candidate regulatory elements
1
chromatin state
1
target gene predictions
1
variant allelic effects
Annotation Category
3
cis-regulatory elements
1
Genetic variant effects
Annotation type Category
2
ATAC-seq
1
DNase-seq
1
snATAC-seq
Available data
3
bed bed3+
2
bigWig
File set status
4
released
Genome assembly (visualization)
3
hg19
2
GRCh38
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
21
retina
20
pigmented layer of retina
6
islet of Langerhans
5
hepatocyte
4
endothelial cell of hepatic sinusoid
4
glutamatergic neuron
4
pancreas
3
heart left ventricle
3
pancreatic alpha cell
3
pancreatic beta cell
2
cardiac fibroblast
2
caudate nucleus
2
endothelial cell
2
fibroblast
2
globus pallidus
2
hepatic stellate cell
2
kidney glomerular epithelial cell
2
medulla oblongata
2
midbrain
2
middle frontal gyrus
2
omental fat pad
2
pancreatic delta cell
2
pancreatic polypeptide-secreting cell
2
pons
2
putamen
2
superior temporal gyrus
2
tibial nerve
1
A-673 cell
1
Ammon's horn
1
HepG2
1
T cell
1
ascending aorta
1
cerebellar cortex
1
cerebellum
1
coronary artery
1
frontal cortex
1
gabaergic neuron
1
glomerular visceral epithelial cell
1
heart
1
kidney distal convoluted tubule epithelial cell
1
kidney interstitial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
kidney tubule cell
1
liver
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
microglial cell/astrocyte
1
neuron
1
non-neuronal cell
1
occipital lobe
1
oligodendrocyte
1
osteoblast
1
pancreatic acinar cell
1
pancreatic ductal cell
1
pancreatic endothelial cell
1
pancreatic immune cell
1
pancreatic stellate cell
1
proximal tubule cells with injury markers
1
renal intercalated cell
1
renal principal cell
1
right atrium auricular region
1
smooth muscle cell
1
subcutaneous adipose tissue
1
tibial artery
Organ
4
epithelium
2
kidney
Life stage
4
adult
1
unknown
Date released
1
August, 2021
1
January, 2020
1
May, 2020
1
May, 2022
Software used
3
macs
1
deltasvm
Lab
2
AMP-T2D consortium
1
Bing Ren, UCSD
1
Katalin Susztak, Upenn
Project
4
AMP
RFA
2
AMP
2
AMP2
Showing 4 of 4 results
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Download
FileSet
DSR426RPD
released
Annotation file set
: Accessible chromatin annotation of Endothelial cells from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR493PXL
released
Annotation file set
: Accessible chromatin from Katalin Susztak 75kidney Project of Endothelial cells
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR299RQY
released
Annotation file set
: Variant allelic effects of kidney glomerular epithelial cell ENCODE DHSseq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR717HZO
released
Annotation file set
: Accessible chromatin annotation of kidney glomerular epithelial cell from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP