Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
5
gene expression
2
accessible chromatin
1
variant allelic effects
Annotation Category
2
cis-regulatory elements
Annotation type Category
2
snATAC-seq
Available data
2
bed bed3+
1
bigBed narrowPeak
1
bigWig
File set status
2
released
Genome assembly (visualization)
2
hg19
1
GRCh38
Organism
2
Homo sapiens
Biosample type
2
primary cell
Biosample term
21
retina
20
pigmented layer of retina
5
hepatocyte
5
islet of Langerhans
4
endothelial cell of hepatic sinusoid
4
glutamatergic neuron
3
pancreas
2
fibroblast
2
heart left ventricle
2
omental fat pad
2
pancreatic alpha cell
2
pancreatic beta cell
1
cardiac fibroblast
1
A-673 cell
1
Ammon's horn
1
HepG2
1
T cell
1
ascending aorta
1
caudate nucleus
1
cerebellar cortex
1
cerebellum
1
coronary artery
1
endothelial cell
1
frontal cortex
1
gabaergic neuron
1
globus pallidus
1
heart
1
hepatic stellate cell
1
kidney glomerular epithelial cell
1
kidney tubule cell
1
liver
1
macrophage
1
medulla oblongata
1
microglial cell/astrocyte
1
midbrain
1
middle frontal gyrus
1
neuron
1
non-neuronal cell
1
occipital lobe
1
oligodendrocyte
1
osteoblast
1
pancreatic acinar cell
1
pancreatic delta cell
1
pancreatic ductal cell
1
pancreatic endothelial cell
1
pancreatic immune cell
1
pancreatic polypeptide-secreting cell
1
pancreatic stellate cell
1
pons
1
putamen
1
right atrium auricular region
1
smooth muscle cell
1
subcutaneous adipose tissue
1
superior temporal gyrus
1
tibial artery
1
tibial nerve
Organ
2
epithelium
1
pancreas
Life stage
2
adult
1
unknown
Date released
1
February, 2024
1
May, 2022
Software used
2
macs
Lab
1
Bing Ren, UCSD
Katalin Susztak, Upenn
1
Kyle Gaulton, UCSD
Project
2
AMP
RFA
1
AMP
1
AMP2
lab.title!
Katalin Susztak, Upenn
Showing 2 of 2 results
table-tab-icon
matrix-icon
Download
FileSet
DSR426RPD
released
Annotation file set
: Accessible chromatin annotation of Endothelial cells from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR614CXC
released
Annotation file set
: pancreatic gamma cell accessible chromatin annotation from snATAC
Lab:
Kyle Gaulton, UCSD
Project:
AMP