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Schema
Citing CMDGA
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Annotation type
7
gene expression
1
accessible chromatin
Annotation Category
7
Gene expression levels
1
cis-regulatory elements
Annotation type Category
6
scRNA-seq
1
ATAC-seq
1
RNA-seq
Available data
7
tsv
3
txt
1
bed bed3+
1
bigWig
File set status
8
released
Genome assembly (visualization)
1
hg19
Organism
8
Homo sapiens
Biosample type
8
primary cell
Biosample term
22
retina
20
pigmented layer of retina
18
hepatocyte
16
epithelial cell of proximal tubule
13
glomerular endothelial cell
13
monocyte
10
islet of Langerhans
8
endothelial cell
8
endothelial cell of hepatic sinusoid
7
kidney loop of Henle thin ascending limb epithelial cell
6
subcutaneous adipose tissue
5
glomerular visceral epithelial cell
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
regulatory T cell
4
T-helper 1 cell
4
T-helper 17 cell
4
bone tissue
4
glutamatergic neuron
4
kidney connecting tubule epithelial cell
4
kidney interstitial cell
4
omental fat pad
3
Adaptive / Maladaptive / Repairing Fibroblast
3
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
3
Afferent / Efferent Arteriole Endothelial Cell
3
B Cell
3
Classical Dendritic Cell
3
Connecting Tubule Cell
3
Connecting Tubule Intercalated Cell Type A
3
Connecting Tubule Principal Cell
3
Cortical Thick Ascending Limb Cell
3
Cycling Endothelial Cell
3
Cycling Epithelial Cell
3
Cycling Mononuclear Phagocyte
3
Cycling T Cell
3
Cytotoxic T Cell
3
Degenerative Connecting Tubule Cell
3
Degenerative Connecting Tubule Cell / Principal Cell
3
Degenerative Cortical Thick Ascending Limb Cell
3
Degenerative Distal Convoluted Tubule Cell
3
Degenerative Intercalated Cell Type A
3
Degenerative Peritubular Capillary Endothelial Cell
3
Degenerative Principal Cell
3
Degenerative Proximal Tubule Epithelial Cell
3
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
3
Degenerative Vascular Smooth Muscle Cell
3
Descending Thin Limb Cell Type 1
3
Distal Convoluted Tubule Cell Type 1
3
Fibroblast
3
Glomerular Capillary Endothelial Cell
3
Intercalated Cell Type A
3
Intercalated Cell Type B
3
Lymphatic Endothelial Cell
3
M2 Macrophage
3
Mast Cell
3
Medullary Thick Ascending Limb Cell
3
Mesangial Cell
3
Monocyte
3
Monocyte-derived Cell
3
Myofibroblast
3
Natural Killer T Cell
3
Natural Killer T Cell Type 1
3
Natural Killer T Cell Type 2
3
Non-Classical Monocyte
3
Parietal Epithelial Cell
3
Peritubular Capillary Endothelial Cell
3
Plasma Cell
3
Plasmacytoid Dendritic Cell
3
Podocyte
3
Principal Cell
3
Proximal Tubule Epithelial Cell Segment 1 and 2
3
Proximal Tubule Epithelial Cell Segment 3
3
Regulatory T Cell
3
Renin-positive Juxtaglomerular Granular Cell
3
T Cell
3
Transitional Principal-Intercalated Cell
3
Vascular Smooth Muscle Cell / Pericyte
3
adipose tissue
3
adult endothelial progenitor cell
3
heart left ventricle
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
mesangial cell
3
pancreas
3
pancreatic alpha cell
3
pancreatic beta cell
3
right atrium auricular region
3
tibial nerve
2
Ammon's horn
2
Kupffer cell
2
ascending aorta
2
body of pancreas
2
caudate nucleus
2
cerebellum
2
coronary artery
2
frontal cortex
2
gamma-delta T cell
2
heart
2
hepatic stellate cell
2
kidney glomerular epithelial cell
2
kidney inner medulla collecting duct intercalated cell
2
kidney tubule cell
2
macrophage
2
natural killer cell
2
osteoblast
2
pancreatic acinar cell
2
pancreatic delta cell
2
pancreatic ductal cell
2
pancreatic polypeptide-secreting cell
2
putamen
2
renal principal cell
2
smooth muscle cell of the coronary artery
2
tibial artery
2
vascular associated smooth muscle cell
2
visceral abdominal adipose tissue
1
cardiac fibroblast
1
A-673 cell
1
B-1 B cell
1
B-2 B cell
1
C1 segment of cervical spinal cord
1
CD8-positive, alpha-beta T cell
1
HepG2
1
Schwann cell
1
activated pancreatic stellate cell
1
adipocyte
1
adrenal gland
1
alpha-beta T cell
1
alternatively activated macrophage
1
amygdala
1
anterior cingulate cortex
1
bladder
1
breast - mammary tissue
1
cardiac ventricle fibroblast
1
cells - EBV-transformed lymphocytes
1
cells - cultured fibroblasts
1
cerebellar cortex
1
cerebellum (Hemisphere)
1
cervix - ectocervix
1
cervix - endocervix
1
cholangiocyte
1
colon - sigmoid
1
colon - transverse
1
cytotoxic T cell
1
dendritic cell
1
dorsolateral prefrontal cortex
1
effector CD8-positive, alpha-beta T cell
1
endothelial cell of coronary artery
1
erythroid lineage cell
1
esophagus - gastroesophageal junction
1
esophagus - mucosa
1
esophagus - muscularis
1
fallopian tube
1
gabaergic neuron
1
gastrocnemius medialis(Muscle - Skeletal)
1
globus pallidus
1
hypothalamus
1
inflammatory macrophage
1
kidney - cortex
1
kidney - medulla
1
kidney granular cell
1
kidney inner medulla collecting duct epithelial cell
1
kidney interstitial fibroblast
1
kidney loop of Henle ascending limb epithelial cell
1
kidney loop of Henle epithelial cell
1
kidney loop of Henle thin descending limb epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
left ventricle myocardium
1
liver
1
lung
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
mast cell
1
mature B cell
1
medulla oblongata
1
mesenchymal stem cell of adipose
1
microglial cell/astrocyte
1
midbrain
1
middle frontal gyrus
1
minor salivary gland
1
neuron
1
non-neuronal cell
1
nucleus accumbens
1
occipital lobe
1
oligodendrocyte
1
ovary
1
pancreatic endothelial cell
1
pancreatic epsilon cell
1
pancreatic immune cell
1
pancreatic stellate cell
1
pituitary
1
plasma cell
Organ
8
epithelium
Life stage
8
adult
1
fetal
Date released
4
August, 2021
3
February, 2021
1
May, 2021
May, 2022
Software used
7
r
3
seurat
1
macs
Lab
4
AMP-T2D consortium
4
Katalin Susztak, Upenn
Project
8
AMP
RFA
4
AMP
4
AMP2
month_released!
May, 2022
Showing 8 of 8 results
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Download
FileSet
DSR771OBM
released
Annotation file set
: GSE84133 Gene expression levels (pseudobulks UMI) of endothelial cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR239ZHY
released
Annotation file set
: Gene expression of kidney from Katalin Susztak FNIH Project scRNA-seq for endothelial cell cluster 3
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR555DIA
released
Annotation file set
: Gene expression of kidney from Katalin Susztak FNIH Project scRNA-seq for endothelial cell cluster 2
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR901DMS
released
Annotation file set
: Gene expression of kidney from Katalin Susztak FNIH Project scRNA-seq for endothelial cell cluster 1
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR493PXL
released
Annotation file set
: Accessible chromatin from Katalin Susztak 75kidney Project of Endothelial cells
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR661VCO
released
Annotation file set
: Gene expression levels (pseudobulks UMI) of liver Portal Endothelial Cells from GSE115469 scRNA-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR365BTF
released
Annotation file set
: Gene expression levels (pseudobulks UMI) of liver Central Venous LSECs from GSE115469 scRNA-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR308YEA
released
Annotation file set
: Gene expression levels (pseudobulks UMI) of liver Peripotal LSECs from GSE115469 scRNA-seq
Lab:
AMP-T2D consortium
Project:
AMP