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Schema
Citing CMDGA
Clear Filters
Annotation type
16
accessible chromatin
7
gene expression
7
target gene predictions
2
binding sites
2
caQTL
2
variant allelic effects
1
histone modifications
Annotation Category
7
Gene expression levels
1
cis-regulatory elements
Annotation type Category
6
scRNA-seq
RNA-seq
1
ChIP-seq
1
snRNA-seq
Available data
6
tsv
3
txt
1
bed bed3+
File set status
8
released
Genome assembly (visualization)
2
hg19
Organism
8
Homo sapiens
Biosample type
8
primary cell
Biosample term
86
monocyte
31
CD8-positive, alpha-beta T cell
16
neural progenitor cell
15
epithelial cell of proximal tubule
13
glomerular endothelial cell
11
breast cancer cell
10
progenitor cell of endocrine pancreas
9
extended pluripotent stem (EPS) cells
9
gastric cancer cell
8
Rhabdomyosarcoma
8
endothelial cell
8
neuroblastoma cell
8
pancreatic ductal cell
7
diffuse intrinsic pontine glioma
7
esophageal adenocarcinoma
7
hepatocyte
7
kidney loop of Henle thin ascending limb epithelial cell
6
B-lymphoblastoid cell line
6
Chondroid Chordoma
6
hESC cell
6
kidney interstitial cell
6
liposarcoma
6
neuroblastoma cell line
6
squamous cell lung carcinoma
5
HepG2
5
T-cell acute lymphoblastic leukemia
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
melanoma cell
5
osteosarcoma
4
glomerular visceral epithelial cell
4
kidney connecting tubule epithelial cell
4
kidney distal convoluted tubule epithelial cell
4
mesangial cell
4
natural killer cell
4
pancreatic acinar cell
4
rhabdomyosarcoma cell
3
Adaptive / Maladaptive / Repairing Fibroblast
3
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
3
Afferent / Efferent Arteriole Endothelial Cell
3
B Cell
3
Classical Dendritic Cell
3
Connecting Tubule Cell
3
Connecting Tubule Intercalated Cell Type A
3
Connecting Tubule Principal Cell
3
Cortical Thick Ascending Limb Cell
3
Cycling Endothelial Cell
3
Cycling Epithelial Cell
3
Cycling Mononuclear Phagocyte
3
Cycling T Cell
3
Cytotoxic T Cell
3
Degenerative Connecting Tubule Cell
3
Degenerative Connecting Tubule Cell / Principal Cell
3
Degenerative Cortical Thick Ascending Limb Cell
3
Degenerative Distal Convoluted Tubule Cell
3
Degenerative Intercalated Cell Type A
3
Degenerative Peritubular Capillary Endothelial Cell
3
Degenerative Principal Cell
3
Degenerative Proximal Tubule Epithelial Cell
3
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
3
Degenerative Vascular Smooth Muscle Cell
3
Descending Thin Limb Cell Type 1
3
Distal Convoluted Tubule Cell Type 1
3
Ewing sarcoma
3
Fibroblast
3
Glomerular Capillary Endothelial Cell
3
Intercalated Cell Type A
3
Intercalated Cell Type B
3
Lymphatic Endothelial Cell
3
M2 Macrophage
3
Mast Cell
3
Medullary Thick Ascending Limb Cell
3
Mesangial Cell
3
Monocyte
3
Monocyte-derived Cell
3
Myofibroblast
3
Natural Killer T Cell
3
Natural Killer T Cell Type 1
3
Natural Killer T Cell Type 2
3
Non-Classical Monocyte
3
Parietal Epithelial Cell
3
Peritubular Capillary Endothelial Cell
3
Plasma Cell
3
Plasmacytoid Dendritic Cell
3
Podocyte
3
Principal Cell
3
Proximal Tubule Epithelial Cell Segment 1 and 2
3
Proximal Tubule Epithelial Cell Segment 3
3
Regulatory T Cell
3
Renin-positive Juxtaglomerular Granular Cell
3
T Cell
3
Transitional Principal-Intercalated Cell
3
Vascular Smooth Muscle Cell / Pericyte
3
acute myeloid leukemia
3
adult endothelial progenitor cell
3
brain
3
diffuse large B-cell lymphoma
3
esophageal squamous cell carcinoma
3
glioblastoma cell
3
glioma cell
3
hepatic stellate cell
3
hepatocyte(AFP)
3
keratinocyte
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney resident macrophage
3
lymphoblast
3
lymphoblastoid cell line
3
macrophage
3
mammary epithelial cell
3
nephron progenitor
3
neuronal stem cell
3
pancreatic beta cell
3
pancreatic delta cell
3
pancreatic ductal adenocarcinoma
2
B cell
2
B-lymphocyte
2
COLO205
2
HS-SY-2 cell
2
Jurkat
2
Kupffer cell
2
MCF-7
2
Mantle cell lymphoma
2
RS4-11 cell
2
Rh-4 cell
2
S-shaped body
2
Th1 cell
2
acute myeloid leukemia cell
2
adipocyte
2
bronchial epithelial cell
2
cardiac muscle cell
2
cardiomyocytes (cardiac muscle cell)
2
chronic lymphocytic leukemia
2
colon adenocarcinoma
embryonic stem cell
2
endometriosis
2
epithelial ovarian cancer cell
2
erythroid progenitor cell
2
esophageal carcinoma
2
fibroblast
2
fibroblast of cardiac tissue
2
foreskin fibroblast
2
gamma-delta T cell
2
glial cell
2
glioblastoma multiforme cancer stem cell
2
heart
2
hematopoietic cell
2
immortal foreskin-derived fibroblast cell line cell
2
immortal neural cell line cell
2
kidney
2
kidney inner medulla collecting duct intercalated cell
2
kidney loop of Henle descending limb epithelial cell
2
leukemic stem cell
2
leukocyte
2
liver
2
mantle cell lymphoma cell
2
mast cell
2
medulloblastoma cell line
2
mesenchymal stem cell
2
meso-epithelial cell
2
metastatic melanoma
2
multiple myeloma cell line
2
osteoblast
2
pancreatic alpha cell
2
pancreatic cell line
2
pancreatic polypeptide-secreting cell
2
pancreatic stellate cell
2
placenta
2
plasma cell
2
pre-B acute lymphoblastic leukemia cell
2
preadipocyte
2
prostate gland
2
renal vesicle
2
skeletal muscle fiber
2
synovial sarcoma cell
2
tracheal epithelial cell
2
triple-negative breast cancer
2
umbilical cord mesenchymal stem cell line cell
2
urinary bladder cancer cell
2
vascular associated smooth muscle cell
1
143B
1
22Rv1
1
501A
1
5637
1
697 cell
1
769-P cell
1
76NF2V cell
1
786-O cell
1
A-1847 cell
1
A-375 cell
1
A-498 cell
1
A-673 cell
1
A549
1
AG04449 cell
1
AG04450 cell
1
AG08470 cell
Organ
8
epithelium
Life stage
6
adult
Date released
3
August, 2021
3
February, 2021
1
February, 2024
1
May, 2021
Software used
7
r
3
seurat
1
deeptools
1
macs
1
samtools
1
umitools
Lab
4
AMP-T2D consortium
3
Katalin Susztak, Upenn
1
Stephen Parker, UMich
Project
8
AMP
RFA
4
AMP
4
AMP2
biosample_term_name!
embryonic stem cell
annotation_type_category!
RNA-seq
Showing 8 of 8 results
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Download
FileSet
DSR771OBM
released
Annotation file set
: GSE84133 Gene expression levels (pseudobulks UMI) of endothelial cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR239ZHY
released
Annotation file set
: Gene expression of kidney from Katalin Susztak FNIH Project scRNA-seq for endothelial cell cluster 3
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR555DIA
released
Annotation file set
: Gene expression of kidney from Katalin Susztak FNIH Project scRNA-seq for endothelial cell cluster 2
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR901DMS
released
Annotation file set
: Gene expression of kidney from Katalin Susztak FNIH Project scRNA-seq for endothelial cell cluster 1
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR296FOQ
released
Annotation file set
: Histone modifications annotation for Cardiovascular Endothelial_Cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR251UJD
released
Annotation file set
: Cell type gene expression mean TPM and bw of endothelial cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR661VCO
released
Annotation file set
: Gene expression levels (pseudobulks UMI) of liver Portal Endothelial Cells from GSE115469 scRNA-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR308YEA
released
Annotation file set
: Gene expression levels (pseudobulks UMI) of liver Peripotal LSECs from GSE115469 scRNA-seq
Lab:
AMP-T2D consortium
Project:
AMP