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Schema
Citing CMDGA
Clear Filters
Annotation type
16
accessible chromatin
7
gene expression
7
target gene predictions
2
caQTL
2
variant allelic effects
1
eQTL
Annotation Category
7
Gene expression levels
1
Genetic variant effects
Annotation type Category
5
scRNA-seq
2
RNA-seq
1
snRNA-seq
Available data
5
tsv
3
txt
1
bed bed3+
File set status
8
released
Genome assembly (visualization)
2
hg19
Organism
8
Homo sapiens
Biosample type
7
primary cell
1
in vitro differentiated cells
Biosample term
19
monocyte
17
islet of Langerhans
10
hepatocyte
9
extended pluripotent stem (EPS) cells
9
macrophage
9
progenitor cell of endocrine pancreas
9
regulatory T cell
8
EndoC_BH1
8
H1-hESC
8
T-helper 1 cell
8
T-helper 17 cell
8
liver
7
endothelial cell
7
neural progenitor cell
7
subcutaneous adipose tissue
6
lymphoblastoid cell line
6
pancreatic ductal cell
4
T-helper 2 cell
4
adipose tissue
4
cerebellum
4
endothelial cell of hepatic sinusoid
4
frontal cortex
4
naive thymus-derived CD8-positive, alpha-beta T cell
4
omental fat pad
4
putamen
4
right atrium auricular region
4
substantia nigra
4
tibial nerve
3
Adaptive / Maladaptive / Repairing Fibroblast
3
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
3
Afferent / Efferent Arteriole Endothelial Cell
3
B Cell
3
CD8-positive, alpha-beta T cell
3
Classical Dendritic Cell
3
Connecting Tubule Cell
3
Connecting Tubule Intercalated Cell Type A
3
Connecting Tubule Principal Cell
3
Cortical Thick Ascending Limb Cell
3
Cycling Endothelial Cell
3
Cycling Epithelial Cell
3
Cycling Mononuclear Phagocyte
3
Cycling T Cell
3
Cytotoxic T Cell
3
Degenerative Connecting Tubule Cell
3
Degenerative Connecting Tubule Cell / Principal Cell
3
Degenerative Cortical Thick Ascending Limb Cell
3
Degenerative Distal Convoluted Tubule Cell
3
Degenerative Intercalated Cell Type A
3
Degenerative Peritubular Capillary Endothelial Cell
3
Degenerative Principal Cell
3
Degenerative Proximal Tubule Epithelial Cell
3
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
3
Degenerative Vascular Smooth Muscle Cell
3
Descending Thin Limb Cell Type 1
3
Distal Convoluted Tubule Cell Type 1
3
Fibroblast
3
Glomerular Capillary Endothelial Cell
3
Intercalated Cell Type A
3
Intercalated Cell Type B
3
Lymphatic Endothelial Cell
3
M2 Macrophage
3
Mast Cell
3
Medullary Thick Ascending Limb Cell
3
Mesangial Cell
3
Monocyte
3
Monocyte-derived Cell
3
Myofibroblast
3
Natural Killer T Cell
3
Natural Killer T Cell Type 1
3
Natural Killer T Cell Type 2
3
Non-Classical Monocyte
3
Parietal Epithelial Cell
3
Peritubular Capillary Endothelial Cell
3
Plasma Cell
3
Plasmacytoid Dendritic Cell
3
Podocyte
3
Principal Cell
3
Proximal Tubule Epithelial Cell Segment 1 and 2
3
Proximal Tubule Epithelial Cell Segment 3
3
Regulatory T Cell
3
Renin-positive Juxtaglomerular Granular Cell
3
T Cell
3
T follicular helper cell
3
Transitional Principal-Intercalated Cell
3
Vascular Smooth Muscle Cell / Pericyte
3
amygdala
3
anterior cingulate cortex
3
blood cell
3
body of pancreas
3
brain
3
caudate nucleus
3
central memory CD8-positive, alpha-beta T cell
3
coronary artery
3
effector memory CD8-positive, alpha-beta T cell
3
hepatocyte(AFP)
3
hypothalamus
3
memory B cell
3
naive B cel
3
naive thymus-derived CD4-positive, alpha-beta T cell
3
nucleus accumbens
3
pancreatic acinar cell
3
pancreatic alpha cell
3
pancreatic beta cell
3
pancreatic delta cell
3
skin of body
3
smooth muscle cell
3
tibial artery
2
Ammon's horn
2
B cell
2
C1 segment of cervical spinal cord
2
T cell
2
adrenal gland
2
articular chondrocyte
2
blood
2
cardiomyocytes (cardiac muscle cell)
2
cartilage tissue
2
cerebellum (Hemisphere)
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
epithelial cell of proximal tubule
2
fibroblast
2
gamma-delta T cell
2
gastrocnemius medialis(Muscle - Skeletal)
2
glomerular endothelial cell
2
heart
2
heart left ventricle
2
iPSC derived cell line
2
left ventricle myocardium
2
lung
2
mature natural killer cell
2
memory T cell
2
memory regulatory T cell
2
mesenchymal stem cell
2
minor salivary gland
2
muscle
2
natural killer cell
2
neutrophil
2
ovary
2
pancreatic polypeptide-secreting cell
2
pancreatic stellate cell
2
retina
2
right lobe of liver
2
skeletal muscle fiber
2
skeletal muscle satellite cell
2
skeletal muscle tissue
2
spleen
2
stomach
2
testis
2
type I muscle cell
2
type II muscle cell
2
uterus
2
vagina
1
B-1 B cell
1
B-1a B cell
1
B-2 B cell
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
Leydig cell
1
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
Schwann cell
1
abdominal aorta artery
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
activated pancreatic stellate cell
1
adipocyte
1
alternatively activated macrophage
1
aorta
1
aortic valve
1
ascending aorta
1
astrocyte
1
bladder
1
breast
1
breast - mammary tissue
1
cardiac atrium fibroblast
1
cardiac fibroblast
1
cardiac muscle cell (pacemaker cell)
1
cardiac precursors (cardiac muscle cell)
1
cardiac ventricle fibroblast
1
cells - EBV-transformed lymphocytes
1
cells - cultured fibroblasts
1
central memory CD4-positive, alpha-beta T cell
1
cerebellar hemisphere
1
cervix - ectocervix
1
cervix - endocervix
1
colon - sigmoid
1
colon - transverse
1
colon sigmoid
1
cortex
1
cortex of kidney
1
cytotoxic T cell
1
dendritic cell
1
diencephalon
1
dorsolateral prefrontal cortex
1
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
1
effector CD8-positive, alpha-beta T cell
1
effector memory CD4-positive, alpha-beta T cell
1
embryonic stem cell
Organ
7
epithelium
Life stage
4
adult
Date released
February, 2021
3
August, 2021
2
February, 2024
2
May, 2021
1
August, 2018
Software used
7
r
3
seurat
1
deeptools
1
qTLtools
1
samtools
1
umitools
Lab
3
AMP-T2D consortium
3
Katalin Susztak, Upenn
2
Stephen Parker, UMich
Project
8
AMP
RFA
5
AMP2
3
AMP
month_released!
February, 2021
Showing 8 of 8 results
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Download
FileSet
DSR771OBM
released
Annotation file set
: GSE84133 Gene expression levels (pseudobulks UMI) of endothelial cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR669UJX
released
Annotation file set
: Gene expression annotation of endothelial cell_EC ISL1-PECAM1+ on day 10 from embryonic stem cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR239ZHY
released
Annotation file set
: Gene expression of kidney from Katalin Susztak FNIH Project scRNA-seq for endothelial cell cluster 3
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR555DIA
released
Annotation file set
: Gene expression of kidney from Katalin Susztak FNIH Project scRNA-seq for endothelial cell cluster 2
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR901DMS
released
Annotation file set
: Gene expression of kidney from Katalin Susztak FNIH Project scRNA-seq for endothelial cell cluster 1
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR876MNY
released
Annotation file set
: Expression QTLs of endothelial cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR251UJD
released
Annotation file set
: Cell type gene expression mean TPM and bw of endothelial cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
TSTSR570PWL
released
Annotation file set
: mesenchymal cell TPM gene expreassion matrix and statistic summary from scRNA-seq publications for non-diabetic adults
Lab:
AMP-T2D consortium
Project:
AMP