Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
10
gene expression
5
accessible chromatin
2
binding sites
2
caQTL
2
variant allelic effects
1
eQTL
1
histone modifications
Annotation Category
6
cis-regulatory elements
Annotation type Category
3
snATAC-seq
1
ATAC-seq
1
ChIP-seq
Available data
6
bed bed3+
3
bigWig
File set status
6
released
Genome assembly (visualization)
6
hg19
2
GRCh38
Organism
6
Homo sapiens
Biosample type
5
primary cell
1
tissue
Biosample term
103
monocyte
33
CD8-positive, alpha-beta T cell
26
neural progenitor cell
24
retina
20
pigmented layer of retina
12
kidney
11
breast cancer cell
11
hepatocyte
9
EndoC_BH1
9
Rhabdomyosarcoma
9
gastric cancer cell
9
retinal pigment epithelial cell
8
embryonic stem cell
8
neuroblastoma cell
7
HepG2
7
diffuse intrinsic pontine glioma
7
esophageal adenocarcinoma
7
islet of Langerhans
7
osteoblast
7
pancreatic ductal cell
6
B cell
6
B-lymphoblastoid cell line
6
Chondroid Chordoma
6
SGBS preadipocytes
6
adipocyte
6
chondrocyte
6
endothelial cell
6
hESC cell
6
heart
6
liposarcoma
6
liver
6
neuroblastoma cell line
6
pancreas
6
squamous cell lung carcinoma
5
T-cell acute lymphoblastic leukemia
5
brain
5
melanoma cell
5
osteosarcoma
5
regulatory T cell
4
Rh-4 cell
4
acute myeloid leukemia
4
acute myeloid leukemia cell
4
cardiac muscle cell
4
endothelial cell of hepatic sinusoid
4
fibroblast
4
fibroblast of cardiac tissue
4
glutamatergic neuron
4
heart left ventricle
4
hepatic stellate cell
4
lymphoblastoid cell line
4
mammary epithelial cell
4
mesenchymal stem cell
4
natural killer cell
4
neuronal stem cell
4
pancreatic acinar cell
4
pancreatic beta cell
4
rhabdomyosarcoma cell
4
stomach
3
cardiac fibroblast
3
B-lymphocyte
3
COLO205
3
Ewing sarcoma
3
Jurkat
3
MCF-7
3
RS4-11 cell
3
T cell
3
T-helper 1 cell
3
Th1 cell
3
adipose-derived stem cell
3
aortic endothelial cell
3
bone marrow cell
3
bronchial epithelial cell
3
caudate nucleus
3
choroid plexus epithelial cell
3
coronary artery
3
diffuse large B-cell lymphoma
3
erythroid cell
3
esophageal squamous cell carcinoma
3
foreskin fibroblast
3
glioblastoma cell
3
glioma cell
3
globus pallidus
3
glomerular visceral epithelial cell
3
keratinocyte
3
lymphoblast
3
macrophage
3
midbrain
3
occipital lobe
3
pancreatic alpha cell
3
pancreatic ductal adenocarcinoma
3
pancreatic stellate cell
3
placenta
3
preadipocyte
3
prostate gland
3
putamen
3
right atrium auricular region
3
skeletal muscle myoblast
3
skin fibroblast
3
smooth muscle cell
3
spinal cord
3
superior temporal gyrus
3
tibial artery
3
tibial nerve
3
tracheal epithelial cell
2
786-O cell
2
A-673 cell
2
A549
2
AG04449 cell
2
AG04450 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803 cell
2
Ammon's horn
2
BE(2)-C
2
BJ cell
2
CD1c-positive myeloid dendritic cell
2
CD4-positive helper T cell
2
CMK
2
Caco-2 cell
2
D341 Med cell
2
G-401 cell
2
GM06990
2
GM12864
2
GM12865
2
GM12878
2
GM18507
2
GM19240
2
GM23248
2
H1-hESC
2
H7-hESC
2
HAC cell
2
HAP-1
2
HBMEC cell
2
HCT-116 cell
2
HEK293
2
HL-60
2
HS-SY-2 cell
2
HT-29
2
HeLa cell
2
HuH-7
2
IMR-90
2
Ishikawa
2
K562
2
KARPAS-422 cell
2
Kasumi-1
2
LHCN-M2
2
LNCAP
2
LoVo cell
2
MCF10A-Er-Src cell
2
MDA-MB-231 cell
2
MG63
2
MM.1S
2
MOLM-13 cell
2
Mantle cell lymphoma
2
Myoblasts
2
NAMALWA cell
2
NB-4 cell
2
NCCIT cell
2
NHBE cell
2
NHDF cell
2
NHEK
2
NT2-D1 cell
2
Normal Human Astrocytes
2
OCI-AML3
2
OCI-LY7
2
PA-TU-8988T cell
2
PANC-1 cell
2
PC-3
2
PC-9
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
REH cell
2
RKO
2
RPMI8226
2
RWPE1
2
Rh-5 cell
2
SAEC
2
SK-N-DZ
2
SK-N-MC
2
SK-N-SH_RA
2
SKMC
2
SW480
2
Saos-2 cell
2
T follicular helper cell
2
T-47D cell
2
T-helper 17 cell
2
T-helper 2 cell
2
Th17 cell
2
U-266 cell
2
U-87 MG
2
U2OS
2
U937
2
WERI-Rb-1
2
WI-38 cell
2
Z-138
2
ZR-75-1 cell
2
adipose tissue
2
aortic adventitial fibroblast
2
astrocyte
2
brain pericyte
2
cardiac myocyte cell derived cell line
Organ
6
epithelium
Life stage
2
adult
1
unknown
Date released
2
February, 2024
2
May, 2022
1
August, 2021
1
February, 2021
Software used
6
macs
Lab
2
AMP-T2D consortium
1
Bing Ren, UCSD
1
Katalin Susztak, Upenn
1
Kyle Gaulton, UCSD
1
Stephen Parker, UMich
Project
10
ENCODE
6
AMP
1
T1D
RFA
3
AMP
3
AMP2
Showing 6 of 6 results
table-tab-icon
matrix-icon
Download
FileSet
DSR369PUU
released
Annotation file set
: accessible chromatin annotation from scATAC-seq of Endothelial
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR897TMQ
released
Annotation file set
: Accessible chromatin from snATAC-seq of endothelial cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR426RPD
released
Annotation file set
: Accessible chromatin annotation of Endothelial cells from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR493PXL
released
Annotation file set
: Accessible chromatin from Katalin Susztak 75kidney Project of Endothelial cells
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR296FOQ
released
Annotation file set
: Histone modifications annotation for Cardiovascular Endothelial_Cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR264NGG
released
Annotation file set
: Cell type chromatin broad peaks and bw of endothelial cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP