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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
24
accessible chromatin
17
target gene predictions
14
candidate regulatory elements
12
gene expression
8
chromatin state
3
histone modifications
2
binding sites
2
caQTL
2
variant allelic effects
1
eQTL
Annotation Category
3
cis-regulatory elements
2
Genetic variant effects
Annotation type Category
3
ChIP-seq
2
snATAC-seq
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
3
primary cell
2
in vitro differentiated cells
Biosample term
86
monocyte
30
CD8-positive, alpha-beta T cell
16
neural progenitor cell
11
breast cancer cell
9
gastric cancer cell
8
Rhabdomyosarcoma
8
neuroblastoma cell
7
diffuse intrinsic pontine glioma
7
esophageal adenocarcinoma
6
B-lymphoblastoid cell line
6
Chondroid Chordoma
6
hESC cell
6
liposarcoma
6
neuroblastoma cell line
6
squamous cell lung carcinoma
5
HepG2
5
T-cell acute lymphoblastic leukemia
5
melanoma cell
5
osteosarcoma
4
hepatocyte
4
rhabdomyosarcoma cell
3
CD4-positive helper T cell
3
Ewing sarcoma
3
acute myeloid leukemia
3
brain
3
diffuse large B-cell lymphoma
3
endothelial cell
3
esophageal squamous cell carcinoma
3
glioblastoma cell
3
glioma cell
3
keratinocyte
3
liver
3
lymphoblast
3
lymphoblastoid cell line
3
mammary epithelial cell
3
neuronal stem cell
3
pancreatic ductal adenocarcinoma
2
B cell
2
B-lymphocyte
2
COLO205
2
HS-SY-2 cell
2
Jurkat
2
MCF-7
2
Mantle cell lymphoma
2
RS4-11 cell
2
Rh-4 cell
2
Th1 cell
2
acute myeloid leukemia cell
2
bronchial epithelial cell
2
cardiac muscle cell
2
chronic lymphocytic leukemia
2
colon adenocarcinoma
2
embryonic stem cell
2
endometriosis
2
epithelial ovarian cancer cell
2
erythroid progenitor cell
2
esophageal carcinoma
2
fibroblast
2
fibroblast of cardiac tissue
2
foreskin fibroblast
2
glioblastoma multiforme cancer stem cell
2
hematopoietic cell
2
hepatic stellate cell
2
immortal foreskin-derived fibroblast cell line cell
2
immortal neural cell line cell
2
kidney
2
leukemic stem cell
2
macrophage
2
mantle cell lymphoma cell
2
medulloblastoma cell line
2
mesenchymal stem cell
2
metastatic melanoma
2
multiple myeloma cell line
2
natural killer cell
2
osteoblast
2
pancreatic cell line
2
pancreatic ductal cell
2
placenta
2
pre-B acute lymphoblastic leukemia cell
2
preadipocyte
2
prostate gland
2
smooth muscle cell of the coronary artery
2
synovial sarcoma cell
2
tracheal epithelial cell
2
triple-negative breast cancer
2
umbilical cord mesenchymal stem cell line cell
2
urinary bladder cancer cell
1
143B
1
22Rv1
1
501A
1
5637
1
697 cell
1
769-P cell
1
76NF2V cell
1
786-O cell
1
A-1847 cell
1
A-375 cell
1
A-498 cell
1
A-673 cell
1
A549
1
AG04449 cell
1
AG04450 cell
1
AG08470 cell
1
AG09309 cell
1
AG09319 cell
1
AG10803 cell
1
AGS cell
1
ALL-SIL cell
1
ARH-77 cell
1
AU565 cell
1
Adipose stromal cell
1
AsPC-1 cell
1
B-cell lymphoma cell
1
BCBL-1 cell
1
BE(2)-C
1
BEAS-2B cell
1
BG03
1
BGC-823 cell
1
BHY cell
1
BICR 31
1
BJ cell
1
BT-474 cell
1
BT-549 cell
1
Barrett's epithelial cell line
1
Barrett's esophagus
1
Brodmann (1909) area 9
1
BxPC-3 cell
1
C666-1 cell
1
CA46 cell
1
CAL-33 cell
1
CAL-51 cell
1
CCRF-CEM cell
1
CD1c-positive myeloid dendritic cell
1
CD34-positive, CD38-negative hematopoietic stem cell
1
CD34-positive, CD38-positive common myeloid progenitor OR CD34-positive, CD38-positive common lymphoid progenitor
1
CD8-Positive T-Lymphocytes
1
CFPAC-1 cell
1
CHL-1 cell
1
CHP-134 cell
1
CHP-212 cell
1
CMK
1
COLO 679 cell
1
COLO 741 cell
1
COLO-320 cell
1
COR-L311 cell
1
CTV-1 cell
1
CaSki cell
1
Caco-2 cell
1
Caki-1 cell
1
Calu-1 cell
1
Calu-3 cell
1
Capan-1 cell
1
Capan-2 cell
1
Crypt of Lieberkuhn
1
CyT49
1
D283 Med cell
1
D341 Med cell
1
DK cell
1
DLD-1 cell
1
DMS 114 cell
1
DMS 53 cell
1
DMS 79 cell
1
DND-41 cell
1
DOHH-2 cell
1
DU 145 cell
1
Daudi
1
Detroit562
1
EAhy 926 cell
1
EBC-1
1
EJM cell
1
EOL-1 cell
1
EndoC_BH1
1
FLO-1 cell
1
FU97 cell
1
FaDu cell
1
G-401 cell
1
GM06990
1
GM10847
1
GM12864
1
GM12865
1
GM12866
1
GM12872
1
GM12873
1
GM12875
1
GM12878
1
GM12891
1
GM12892
1
GM18505
1
GM18507
1
GM18526
1
GM18951
1
GM19099
1
GM19193
1
GM19238
1
GM19239
1
GM19240
1
GM23248
1
GRANTA-519 cell
1
H1-hESC
1
H7-hESC
Organ
3
epithelium
Date released
3
February, 2021
1
February, 2023
1
October, 2022
Software used
3
macs
2
rasqual
1
eigenmt
Lab
4
AMP-T2D consortium
1
Stephen Parker, UMich
Project
5
AMP
RFA
4
AMP
1
AMP2
Showing 5 of 5 results
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Download
FileSet
DSR375DYB
released
Annotation file set
: Chromatin accessibility QTLs in endothelial cells passing genome-wide multiple testing correction (5% FDR) of ATAC-seq in 35 human coronary artery patients
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR296FOQ
released
Annotation file set
: Histone modifications annotation for Cardiovascular Endothelial_Cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR801NZA
released
Annotation file set
: Histone modifications annotation for Blood CD20+ from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR759UOG
released
Annotation file set
: Histone modifications annotation for Blood B-cell_BRACKETLCD19+BRACKETR from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR259FVK
released
Annotation file set
: Chromatin site QTLs of endothelial cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP