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Citing CMDGA
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Annotation type
2
caQTL
1
target gene predictions
Annotation Category
2
Genetic variant effects
1
Target gene links
Annotation type Category
3
snATAC-seq
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
2
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
3
endothelial cell
3
pancreatic alpha cell
3
pancreatic beta cell
3
pancreatic delta cell
2
macrophage
1
CD8-positive, alpha-beta T cell
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
cell
1
conventional dendritic cell
1
coronary artery
1
fibroblast of the aortic adventitia
1
liver
1
megakaryocyte
1
memory B cell
1
mesenchymal stem cell
1
monocyte
1
naive B cell
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
naive thymus-derived CD8-positive, alpha-beta T cell
1
natural killer cell
1
natural killer cell mediated cytotoxicity
1
non-classical monocyte
1
pancreatic acinar cell
1
pancreatic ductal cell
1
pancreatic polypeptide-secreting cell
1
pancreatic stellate cell
1
plasmacytoid dendritic cell
1
regulatory T cell
1
smooth muscle cell
1
smooth muscle cell of the coronary artery
1
stellate neuron
1
type I muscle cell
1
type II muscle cell
Organ
3
epithelium
Date released
1
February, 2023
1
January, 2021
1
October, 2022
Software used
6
abc
2
rasqual
1
cicero
1
eigenmt
Lab
1
AMP-T2D consortium
1
Kyle Gaulton, UCSD
1
Stephen Parker, UMich
Project
2
AMP
1
T1D
RFA
1
AMP
1
AMP2
1
T1D
Showing 3 of 3 results
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Download
FileSet
DSR375DYB
released
Annotation file set
: Chromatin accessibility QTLs in endothelial cells passing genome-wide multiple testing correction (5% FDR) of ATAC-seq in 35 human coronary artery patients
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR259FVK
released
Annotation file set
: Chromatin site QTLs of endothelial cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR305VNP
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of endothelial
Lab:
Kyle Gaulton, UCSD
Project:
T1D