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Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
2
caQTL
2
variant allelic effects
1
target gene predictions
Annotation Category
4
Genetic variant effects
2
cis-regulatory elements
1
Target gene links
Annotation type Category
7
snATAC-seq
6
ATAC-seq
6
scRNA-seq
4
RNA-seq
ChIP-seq
1
snRNA-seq
Available data
19
bed bed3+
bigWig
File set status
7
released
Genome assembly (visualization)
6
hg19
2
GRCh38
Organism
7
Homo sapiens
Biosample type
7
primary cell
Biosample term
8
fibroblast
7
endothelial cell
6
macrophage
5
smooth muscle cell
4
skeletal muscle fiber
3
T cell
3
enterocyte
3
myofibroblast cell
3
pancreatic alpha cell
3
pancreatic beta cell
3
pancreatic delta cell
2
Schwann cell
2
adipocyte
2
basal cell
2
epithelial cell of esophagus
2
goblet cell
2
mesenchymal stem cell
2
pancreatic acinar cell
2
pancreatic ductal cell
2
type I muscle cell
2
type II muscle cell
2
vascular associated smooth muscle cell
1
CD8-positive, alpha-beta T cell
1
Satellite Cells, Skeletal Muscle
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
bronchial goblet cell
1
cardiac muscle cell
1
cell
1
conventional dendritic cell
1
cortical cell of adrenal gland
1
fibroblast of the aortic adventitia
1
glial cell
1
granulosa cell
1
hepatocyte
1
keratinocyte
1
leukocyte
1
luminal epithelial cell of prostatic duct
1
lymphocyte of B lineage
1
mammary gland epithelial cell
1
mast cell
1
megakaryocyte
1
memory B cell
1
mesothelial cell
1
monocyte
1
naive B cell
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
naive thymus-derived CD8-positive, alpha-beta T cell
1
natural killer cell
1
natural killer cell mediated cytotoxicity
1
neural cell
1
non-classical monocyte
1
pancreatic endocrine cell
1
pancreatic polypeptide-secreting cell
1
pancreatic stellate cell
1
parietal cell
1
peptic cell
1
plasmacytoid dendritic cell
1
regulatory T cell
1
skeletal muscle satellite cell
1
smooth muscle cell of the coronary artery
1
stellate neuron
1
thyroid follicular cell
1
type II pneumocyte
Organ
7
epithelium
Life stage
1
adult
Date released
3
February, 2024
1
February, 2023
1
January, 2021
1
May, 2022
1
October, 2022
Software used
2
deltasvm
2
macs
2
rasqual
1
cicero
1
eigenmt
Lab
3
Bing Ren, UCSD
2
Stephen Parker, UMich
1
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Project
6
AMP
1
T1D
RFA
3
AMP
3
AMP2
1
T1D
annotation_type_category!
ChIP-seq
files.file_type!
bigWig
Showing 7 of 7 results
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Download
FileSet
DSR375DYB
released
Annotation file set
: Chromatin accessibility QTLs in endothelial cells passing genome-wide multiple testing correction (5% FDR) of ATAC-seq in 35 human coronary artery patients
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR426RPD
released
Annotation file set
: Accessible chromatin annotation of Endothelial cells from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR259FVK
released
Annotation file set
: Chromatin site QTLs of endothelial cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR264NGG
released
Annotation file set
: Cell type chromatin broad peaks and bw of endothelial cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR035TOY
released
Annotation file set
: Variant allelic effects annotation of Endothelial cells (sub-type2) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR772CSM
released
Annotation file set
: Variant allelic effects annotation of Endothelial cells from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR305VNP
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of endothelial
Lab:
Kyle Gaulton, UCSD
Project:
T1D