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Schema
Citing CMDGA
Clear Filters
Annotation type
2
binding sites
2
candidate regulatory elements
2
chromatin state
1
histone modifications
1
target gene predictions
Annotation Category
7
cis-regulatory elements
1
Target gene links
Annotation type Category
8
ChIP-seq
6
HiC
5
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
7
bed bed3+
1
bed bed9
File set status
8
released
Genome assembly (visualization)
8
hg19
1
GRCh38
Organism
8
Homo sapiens
Biosample type
8
cell line
Biosample term
23
K562
8
GM12878
7
GM06990
7
GM12875
7
HL-60
7
NAMALWA cell
6
CMK
6
GM12891
6
GM12892
6
GM19238
6
GM19239
6
GM19240
6
HAP-1
6
OCI-LY7
6
RPMI8226
6
peripheral blood mononuclear cell
5
KBM-7
5
NB4
4
GM12873
3
GM10847
3
GM12872
3
GM18505
3
GM18526
3
GM18951
3
GM19099
3
GM19193
2
NAMALWA
2
peripheral blood stem cell
1
GM12874
1
Karpas-422
Organ
37
kidney
37
ureter
8
blood
8
bodily fluid
3
epithelium
Life stage
5
adult
Date released
3
February, 2021
3
September, 2022
1
August, 2017
1
October, 2022
Software used
3
chromhmm
2
macs
2
r
1
encode-ccres
Lab
7
AMP-T2D consortium
1
Stephen Parker, UMich
Project
8
AMP
RFA
8
AMP
Showing 8 of 8 results
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Download
FileSet
DSR903JTP
released
Annotation file set
: Binding sites annotation for GM12878 (GM12878) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR518KFU
released
Annotation file set
: Candidate regulatory elements for BSS00439 GM12878 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR835PAE
released
Annotation file set
: Target gene predictions for BSS00439 GM12878 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR665OQJ
released
Annotation file set
: Chromatin states for BSS00439 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR589MOX
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE GM12878
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR549ZJZ
released
Annotation file set
: Histone modifications annotation for Blood GM12878 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR862UKP
released
Annotation file set
: Binding sites annotation for Blood GM12878 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR588101
released
Annotation file set
: ChromHMM 13-state model for GM12878
Lab:
Stephen Parker, UMich
Project:
AMP