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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
accessible chromatin
2
binding sites
1
histone modifications
Annotation Category
10
Gene expression levels
6
cis-regulatory elements
4
Genetic variant effects
1
Target gene links
Annotation type Category
3
ChIP-seq
2
snATAC-seq
1
ATAC-seq
Available data
6
bed bed3+
2
bigWig
File set status
6
released
Genome assembly (visualization)
17
hg19
GRCh38
Organism
6
Homo sapiens
Biosample type
6
primary cell
Biosample term
44
stomach
41
CD8-positive, alpha-beta T cell
41
heart
34
brain
33
kidney
33
lung
33
muscle of arm
30
placenta
30
retina
30
small intestine
29
adrenal gland
28
large intestine
28
muscle of leg
27
common myeloid progenitor, CD34-positive
27
muscle of back
26
left lung
25
A549
23
right lung
22
hematopoietic multipotent progenitor cell
22
thymus
21
B cell
20
breast cancer cell
20
pigmented layer of retina
20
renal cortex interstitium
20
renal pelvis
20
right kidney
19
spinal cord
18
left kidney
17
liver
17
spleen
16
embryonic stem cell
15
MCF-7
14
CD4-positive, alpha-beta memory T cell
14
foreskin fibroblast
14
foreskin keratinocyte
13
adipocyte
12
K562
12
neuroblastoma cell
11
heart left ventricle
11
mammary epithelial cell
11
neural progenitor cell
11
retinal pigment epithelial cell
10
Rhabdomyosarcoma
10
gastric cancer cell
10
natural killer cell
10
regulatory T cell
10
sigmoid colon
10
trophoblast cell
10
upper lobe of left lung
9
EndoC_BH1
9
adipose tissue
9
cardiac muscle cell
9
diffuse intrinsic pontine glioma
9
endothelial cell of umbilical vein
9
keratinocyte
9
liposarcoma
9
neuronal stem cell
9
skeletal muscle myoblast
8
CD14-positive monocyte
8
CD4-positive, alpha-beta T cell
8
CD8-positive, alpha-beta memory T cell
8
HepG2
8
Peyer's patch
8
T-helper 1 cell
8
bronchial epithelial cell
8
mesenchymal stem cell
8
osteoblast
8
ovary
8
pancreas
8
psoas muscle
8
thyroid gland
8
transverse colon
7
B-lymphoblastoid cell line
7
GM12878
7
H9
7
HEK293
7
T cell
7
body of pancreas
7
caudate nucleus
7
chorionic villus
7
esophageal adenocarcinoma
7
fibroblast cell line
7
fibroblast of lung
7
gastrocnemius medialis
7
monocyte
7
mononuclear cell
7
prostate gland
7
testis
6
22Rv1
6
Chondroid Chordoma
6
GM06990
6
GM12864
6
GM12865
6
H1-hESC
6
HL-60
6
HeLa-S3
6
IMR-90
6
Rh-4 cell
6
SGBS preadipocytes
6
SK-N-MC
6
T-cell acute lymphoblastic leukemia
6
T-helper 17 cell
6
T-helper 2 cell
6
chondrocyte
6
endothelial cell
6
fibroblast of cardiac tissue
6
hESC cell
6
islet of Langerhans
6
layer of hippocampus
6
mammary gland epithelial cell
6
neuroblastoma cell line
6
neurosphere
6
right renal pelvis
6
skeletal muscle tissue
6
substantia nigra
6
temporal lobe
5
AG04449 cell
5
AG04450 cell
5
AG09309 cell
5
AG09319 cell
5
AG10803 cell
5
BE(2)-C
5
BJ cell
5
CD1c-positive myeloid dendritic cell
5
CMK
5
Caco-2 cell
5
Ewing sarcoma
5
GM12875
5
GM19240
5
GM23248
5
HAP-1
5
HT-29
5
Jurkat
5
LHCN-M2
5
LNCAP
5
MG63
5
MM.1S
5
NAMALWA cell
5
NT2-D1 cell
5
OCI-LY7
5
PC-3
5
PC-9
5
RWPE1
5
SK-N-DZ
5
SK-N-SH
5
SW480
5
WERI-Rb-1
5
acute myeloid leukemia
5
esophagus muscularis mucosa
5
esophagus squamous epithelium
5
heart right ventricle
5
lymphoblastoid cell line
5
muscle of trunk
5
osteosarcoma
5
prostate cancer cell line
5
tibial nerve
4
B-lymphocyte
4
COLO205
4
Daoy
4
GM08714
4
GM10248
4
GM10266
4
GM12873
4
GM12891
4
GM12892
4
GM19238
4
GM19239
4
HAC cell
4
HBMEC cell
4
HCT-116 cell
4
HS-SY-2 cell
4
HUES6
4
HuH-7
4
Ishikawa
4
KARPAS-422 cell
4
KBM-7
4
LoVo cell
4
Mantle cell lymphoma
4
NHEK
4
Normal Human Astrocytes
4
OCI-LY1
4
PANC-1 cell
4
RPMI8226
4
RS4-11 cell
4
SJSA1
4
SK-N-SH_RA
4
acute myeloid leukemia cell
4
angular gyrus
4
breast epithelium
4
choroid plexus epithelial cell
4
colonic mucosa
4
diffuse large B-cell lymphoma
4
epithelial cell of prostate
4
erythroid cell
4
esophageal squamous cell carcinoma
4
fibroblast of mammary gland
4
fibroblast of pulmonary artery
4
fibroblast of villous mesenchyme
4
foreskin melanocyte
4
hepatocyte
Organ
6
epithelium
Life stage
1
adult
Date released
3
February, 2021
1
August, 2021
1
February, 2024
1
January, 2021
May, 2022
Software used
6
macs
Lab
3
AMP-T2D consortium
1
Katalin Susztak, Upenn
1
Kyle Gaulton, UCSD
1
Stephen Parker, UMich
Project
5
AMP
1
T1D
RFA
3
AMP
2
AMP2
1
T1D
assembly!
GRCh38
month_released!
May, 2022
Showing 6 of 6 results
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Download
FileSet
DSR493PXL
released
Annotation file set
: Accessible chromatin from Katalin Susztak 75kidney Project of Endothelial cells
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR296FOQ
released
Annotation file set
: Histone modifications annotation for Cardiovascular Endothelial_Cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR406JQN
released
Annotation file set
: Binding sites annotation for Cardiovascular Primary_endothelial_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR388QAH
released
Annotation file set
: Binding sites annotation for Cardiovascular Endothelial_Cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR264NGG
released
Annotation file set
: Cell type chromatin broad peaks and bw of endothelial cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR579LZJ
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of endothelial
Lab:
Kyle Gaulton, UCSD
Project:
T1D