Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
Annotation Category
1
cis-regulatory elements
Available data
1
bed bed3+
1
bigWig
File set status
1
released
Genome assembly (visualization)
1
GRCh38
1
hg19
Organism
1
Homo sapiens
Biosample type
primary cell
1
tissue
Biosample term
90
heart
84
stomach
81
kidney
73
brain
68
lung
67
muscle of arm
63
HeLa-S3
62
small intestine
61
A549
60
adrenal gland
59
placenta
57
muscle of leg
55
large intestine
54
muscle of back
H1-hESC
52
left lung
50
neural progenitor cell
48
liver
47
thymus
45
right lung
42
hematopoietic multipotent progenitor cell
42
right kidney
41
islet of Langerhans
40
K562
40
renal cortex interstitium
40
renal pelvis
40
retina
36
left kidney
34
heart left ventricle
34
spinal cord
32
spleen
30
adipose tissue
25
MCF-7
25
tibial nerve
23
body of pancreas
22
caudate nucleus
22
sigmoid colon
21
pancreas
21
subcutaneous adipose tissue
20
breast cancer cell
20
pigmented layer of retina
19
HFFc6
19
coronary artery
19
heart right ventricle
19
ovary
19
psoas muscle
19
right atrium auricular region
18
substantia nigra
18
tibial artery
17
adipocyte
17
gastrocnemius medialis
17
omental fat pad
17
testis
17
thyroid gland
17
transverse colon
16
HepG2
16
chorionic villus
16
layer of hippocampus
16
muscle of trunk
16
skeletal muscle tissue
16
upper lobe of left lung
15
GM12878
15
H9
15
ascending aorta
15
cerebellum
15
frontal cortex
15
induced pluripotent stem cell
14
endocrine pancreas
14
prostate gland
14
putamen
13
Peyer's patch
13
aorta
13
temporal lobe
12
Ammon's horn
12
left renal cortex interstitium
12
lymphoblastoid cell line
12
neuroblastoma cell
11
cardiac muscle cell
11
left cardiac atrium
11
left renal pelvis
11
right renal pelvis
10
22Rv1
10
Rhabdomyosarcoma
10
breast epithelium
10
esophagus muscularis mucosa
10
esophagus squamous epithelium
10
gastric cancer cell
10
lymphocyte
10
mesenchymal stem cell
10
progenitor cell of endocrine pancreas
10
right renal cortex interstitium
10
thoracic aorta
10
trophoblast
9
HEK293
9
SK-N-DZ
9
cardiomyocytes
9
colonic mucosa
9
diffuse intrinsic pontine glioma
9
esophagus
9
liposarcoma
9
parathyroid adenoma
9
tongue
9
vagina
8
B-lymphoblastoid cell line
8
EndoC_BH1
8
GM06990
8
GM12864
8
GM12865
8
GM19240
8
HL-60
8
IMR-90
8
NAMALWA cell
8
cingulate gyrus
8
duodenal mucosa
8
endodermal cell
8
fibroblast cell line
8
globus pallidus
8
immortal human breast epithelial cell line cell
8
limb
8
lower leg skin
7
AG04449 cell
7
AG04450 cell
7
AG09309 cell
7
AG09319 cell
7
AG10803 cell
7
BE(2)-C
7
BJ cell
7
CMK
7
Caco-2 cell
7
GM12875
7
GM19238
7
GM19239
7
GM23248
7
HAP-1
7
HT-29
7
KARPAS-422 cell
7
LHCN-M2
7
LNCaP clone FGC
7
MG63
7
MM.1S
7
SK-N-MC
7
SK-N-SH
7
T47D
7
WERI-Rb-1
7
amygdala
7
angular gyrus
7
cardiomyocytes (cardiac muscle cell)
7
chorion membrane
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
eye
7
mesendoderm
7
right lobe of liver
7
stomach smooth muscle
6
Brodmann (1909) area 46
6
Chondroid Chordoma
6
Daoy
6
GM08714
6
GM10248
6
GM10266
6
GM12891
6
GM12892
6
GM18507
6
HCT116
6
HUES6
6
HUES8
6
HuH-7
6
KBM-7
6
LoVo cell
6
SJSA1
6
SW480
6
WI38
6
anterior cingulate cortex
6
cardiac precursors (cardiac muscle cell)
6
chondrocyte
6
hESC cell
6
hypothalamus
6
iPSC derived cell line
6
mesodermal cell
6
midbrain
6
middle frontal gyrus
6
mucosa of rectum
6
neuroblastoma cell line
6
nucleus accumbens
6
occipital lobe
6
pancreatic ductal cell
6
superior temporal gyrus
6
urinary bladder
5
A172
5
ACHN
5
C1 segment of cervical spinal cord
5
Caki2
5
CyT49
5
Ewing sarcoma
5
GM04503
5
GM04504
5
H4
5
H7-hESC
5
HK-2 cell
Organ
1
epithelium
Date released
1
February, 2024
May, 2021
Software used
1
macs
Lab
1
Kyle Gaulton, UCSD
Project
1
AMP
RFA
1
AMP
biosample_term_name!
H1-hESC
biosample_type!
primary cell
month_released!
May, 2021
Showing 1 of 1 results
table-tab-icon
matrix-icon
Download
FileSet
DSR369PUU
released
Annotation file set
: accessible chromatin annotation from scATAC-seq of Endothelial
Lab:
Kyle Gaulton, UCSD
Project:
AMP