Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
1
eQTL
1
target gene predictions
Annotation Category
1
Genetic variant effects
1
Target gene links
Annotation type Category
1
RNA-seq
1
snATAC-seq
Available data
2
bed bed3+
File set status
2
released
Genome assembly (visualization)
2
hg19
Organism
2
Homo sapiens
Biosample type
2
primary cell
Biosample term
9
islet of Langerhans
8
macrophage
6
lymphoblastoid cell line
4
monocyte
3
blood cell
3
pancreatic alpha cell
3
pancreatic beta cell
3
pancreatic delta cell
3
regulatory T cell
3
skin of body
2
T cell
2
activated CD4-positive, alpha-beta T cell
2
activated CD8-positive, alpha-beta T cell
2
articular chondrocyte
2
brain
2
endothelial cell
2
fibroblast
2
iPSC derived cell line
2
muscle
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
natural killer cell
2
putamen
2
substantia nigra
1
CD8-positive, alpha-beta T cell
1
Leydig cell
1
T follicular helper cell
1
T-helper 1 cell
1
T-helper 17 cell
1
T-helper 2 cell
1
abdominal aorta artery
1
adipose tissue
1
adrenal gland
1
amygdala
1
anterior cingulate cortex
1
breast
1
caudate nucleus
1
cell
1
cerebellar hemisphere
1
cerebellum
1
colon sigmoid
1
conventional dendritic cell
1
coronary artery
1
cortex
1
cortex of kidney
1
dorsolateral prefrontal cortex
1
esophagus
1
esophagus mucosa
1
esophagus muscularis mucosa
1
fat cell
1
frontal cortex
1
heart left ventricle
1
helper T cell
1
hypothalamus
1
layer of hippocampus
1
liver
1
lung
1
megakaryocyte
1
memory B cell
1
mesenchymal stem cell
1
microglial cell
1
minor salivary gland
1
naive B cel
1
naive B cell
1
natural killer cell mediated cytotoxicity
1
neutrophil
1
non-classical monocyte
1
nucleus accumbens
1
ovary
1
pancreas
1
pancreatic acinar cell
1
pancreatic ductal cell
1
pancreatic polypeptide-secreting cell
1
pancreatic stellate cell
1
pituitary gland
1
placenta
1
plasmacytoid dendritic cell
1
prostate gland
1
retina
1
right atrium auricular region
1
sensory neuron
1
skeletal muscle tissue
1
small intestine
1
smooth muscle cell
1
spinal cord
1
spleen
1
stellate neuron
1
stomach
1
subcutaneous adipose tissue
1
testis
1
thyroid gland
1
tibial artery
1
tibial nerve
1
transverse colon
1
type I muscle cell
1
type II muscle cell
1
uterus
1
vagina
1
visceral abdominal adipose tissue
Organ
2
epithelium
Date released
1
February, 2024
1
January, 2021
Software used
19
macs
10
r
6
abc
3
seurat
2
deltasvm
2
rasqual
1
cicero
1
deeptools
1
eigenmt
1
qTLtools
1
samtools
1
umitools
Lab
1
Kyle Gaulton, UCSD
1
Stephen Parker, UMich
Project
1
AMP
1
T1D
RFA
1
AMP2
1
T1D
biosample_term_name!
SK-N-SH
Showing 2 of 2 results
table-tab-icon
matrix-icon
Download
FileSet
DSR876MNY
released
Annotation file set
: Expression QTLs of endothelial cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR305VNP
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of endothelial
Lab:
Kyle Gaulton, UCSD
Project:
T1D