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Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
1
target gene predictions
Annotation Category
2
cis-regulatory elements
1
Target gene links
Annotation type Category
2
snATAC-seq
Available data
3
bed bed3+
2
bigWig
File set status
3
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
2
primary cell
1
tissue
Biosample term
11
pancreatic alpha cell
11
pancreatic beta cell
11
pancreatic delta cell
9
pancreatic ductal cell
9
pancreatic stellate cell
8
pancreatic acinar cell
5
pancreatic endothelial cell
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
pancreatic polypeptide-secreting cell
3
endothelial cell
3
pancreatic quiescent stellate cell
2
CD8-positive, alpha-beta T cell
2
activated CD4-positive, alpha-beta T cell
2
activated CD8-positive, alpha-beta T cell
2
conventional dendritic cell
2
islet of Langerhans
2
macrophage
2
megakaryocyte
2
memory B cell
2
monocyte
2
naive B cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
natural killer cell
2
natural killer cell mediated cytotoxicity
2
non-classical monocyte
2
plasmacytoid dendritic cell
2
regulatory T cell
2
stellate neuron
1
Pancreatic islets
1
Schwann cell
1
pancreatic A cell
1
pancreatic D cell
1
pancreatic PP cell
1
pancreatic immune cell
1
purified protein and synthetic DNA oligo binding assay
1
tissue-resident macrophage
1
type B pancreatic cell
Organ
3
epithelium
Date released
2
January, 2021
1
February, 2024
Software used
2
macs
1
cicero
Lab
19
Bing Ren, UCSD
11
AMP-T2D consortium
4
Katalin Susztak, Upenn
4
Stephen Parker, UMich
3
Kyle Gaulton, UCSD
Project
2
T1D
1
AMP
RFA
2
T1D
1
AMP
biosample_term_name!
pigmented layer of retina
Showing 3 of 3 results
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Download
FileSet
DSR369PUU
released
Annotation file set
: accessible chromatin annotation from scATAC-seq of Endothelial
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR305VNP
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of endothelial
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR579LZJ
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of endothelial
Lab:
Kyle Gaulton, UCSD
Project:
T1D