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Schema
Citing CMDGA
Clear Filters
Annotation type
8
target gene predictions
Annotation Category
8
Target gene links
cis-regulatory elements
Annotation type Category
6
HiC
2
DNase-seq
1
ATAC-seq
1
ChIP-seq
1
H3K27ac ChIP-Seq
Available data
8
bed bed3+
File set status
8
released
Genome assembly (visualization)
8
hg19
6
GRCh38
Organism
8
Homo sapiens
Biosample type
8
cell line
Biosample term
55
HeLa-S3
47
H1-hESC
32
islet of Langerhans
26
monocyte
25
heart
23
K562
23
kidney
23
stomach
20
brain
20
liver
19
A549
19
CD14-positive monocyte
19
HFFc6
19
adrenal gland
19
lung
18
small intestine
17
induced pluripotent stem cell
17
macrophage
17
muscle of arm
16
adipose tissue
16
placenta
16
subcutaneous adipose tissue
14
common myeloid progenitor, CD34-positive
14
large intestine
14
muscle of leg
14
thymus
13
left lung
13
muscle of back
13
regulatory T cell
13
smooth muscle cell
12
B cell
12
body of pancreas
12
coronary artery
12
fibroblast
12
neural progenitor cell
12
tibial nerve
11
T-helper 1 cell
11
T-helper 17 cell
11
cardiomyocytes
11
heart left ventricle
11
hematopoietic multipotent progenitor cell
11
right atrium auricular region
11
right kidney
11
right lung
10
caudate nucleus
10
frontal cortex
10
pericyte cell
10
pituitary stalk
10
renal cortex interstitium
10
renal pelvis
10
spleen
10
tibial artery
9
CD4-positive, alpha-beta memory T cell
9
adipocyte
9
cerebellum
9
extended pluripotent stem (EPS) cells
9
left kidney
9
naive thymus-derived CD4-positive, alpha-beta T cell
9
neutrophil
9
omental fat pad
9
progenitor cell of endocrine pancreas
9
putamen
9
spinal cord
9
substantia nigra
8
CD8-positive, alpha-beta T cell
8
GM12878
8
H9
8
T cell
8
ascending aorta
8
cardiomyocytes (cardiac muscle cell)
8
natural killer cell
8
ovary
8
psoas muscle
7
Ammon's horn
7
CD8-positive, alpha-beta memory T cell
7
T-helper 2 cell
7
dendritic cell
7
heart right ventricle
7
lymphocyte
7
mesenchymal stem cell
7
pancreas
7
sigmoid colon
7
trophoblast cell
6
MCF-7
6
amygdala
6
anterior cingulate cortex
6
cardiac precursors (cardiac muscle cell)
6
cerebellum (Hemisphere)
6
hypothalamus
6
iPSC derived cell line
6
kidney interstitial cell
6
lymphoblastoid cell line
6
mononuclear cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
nucleus accumbens
6
olfactory receptor cell
6
pancreatic stellate cell
6
retina
6
right lobe of liver
6
skeletal muscle tissue
6
thyroid gland
6
transverse colon
5
Adaptive / Maladaptive / Repairing Fibroblast
5
B Cell
5
C1 segment of cervical spinal cord
5
Classical Dendritic Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Fibroblast
5
M2 Macrophage
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
aorta
5
astrocyte
5
gastrocnemius medialis
5
gastrocnemius medialis(Muscle - Skeletal)
5
left ventricle myocardium
5
memory B cell
5
mesangial cell
5
muscle of trunk
5
skeletal muscle myoblast
5
testis
4
CD4-positive helper T cell
4
CyT49
4
HUES8
4
adult endothelial progenitor cell
4
bone tissue
4
cardiac muscle cell
4
cartilage tissue
4
chorionic villus
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
endocrine pancreas
4
esophagus
4
fibroblast of cardiac tissue
4
fibroblast of dermis
4
fibroblast of lung
4
gamma-delta T cell
4
layer of hippocampus
4
nephron progenitor
4
osteoblast
4
pancreatic MUC5B+ductal cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
skeletal muscle fiber
4
skeletal muscle satellite cell
4
skin of body
4
smooth muscle cell of the coronary artery
4
type I muscle cell
4
type II muscle cell
4
uterus
4
vagina
4
vascular associated smooth muscle cell
4
visceral abdominal adipose tissue
3
CD4-positive, alpha-beta T cell
3
Cycling Mononuclear Phagocyte
3
HCT116
3
HepG2
3
Mast Cell
3
Peyer's patch
3
SK-N-SH
3
Schwann cell
3
T follicular helper cell
3
activated CD4-positive, alpha-beta T cell
3
basal cell
3
blood cell
3
central memory CD8-positive, alpha-beta T cell
3
chorion membrane
3
dorsolateral prefrontal cortex
3
effector memory CD8-positive, alpha-beta T cell
3
endometrium adenocarcinoma
3
esophagus muscularis mucosa
3
foreskin fibroblast
3
hepatic stellate cell
3
immortal human breast epithelial cell line cell
3
kidney cell
3
kidney resident macrophage
3
left cardiac atrium
3
left renal cortex interstitium
3
left renal pelvis
3
mast cell
3
mesendoderm
3
myofibroblast cell
3
naive B cel
3
naive B cell
3
naive T cell
Organ
epithelium
8
embryo
Life stage
1
embryonic
Date released
6
February, 2024
1
May, 2021
1
September, 2022
Software used
1
abc
1
r
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
organ_slims!
epithelium
annotation_category!
cis-regulatory elements
Showing 8 of 8 results
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Download
FileSet
DSR065MCS
released
Annotation file set
: Target gene predictions from Hi-C on H9 cells during cardiomyocyte differentiation. primitive cardiomyocytes
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR258GDM
released
Annotation file set
: Target gene predictions from Hi-C on H9 cells during cardiomyocyte differentiation. mesoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR991YDS
released
Annotation file set
: Target gene predictions from Hi-C on H9 cells during cardiomyocyte differentiation. cardiac mesoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR247GQU
released
Annotation file set
: Target gene predictions from Hi-C on H9 cells during cardiomyocyte differentiation. cardiac progenitors
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR818GTP
released
Annotation file set
: Target gene predictions from Hi-C on H9 cells during cardiomyocyte differentiation. ventricular cardiomyocytes
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR447SRX
released
Annotation file set
: Target gene predictions from Hi-C on H9 cells during cardiomyocyte differentiation. undifferentiated
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR488OVF
released
Annotation file set
: Target gene predictions for BSS00484 H9 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR118KLN
released
Annotation file set
: enhancer-gene predicton of H9-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP