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Schema
Citing CMDGA
Clear Filters
Annotation type
3
accessible chromatin
1
target gene predictions
Annotation Category
3
cis-regulatory elements
1
Target gene links
Annotation type Category
4
snATAC-seq
Available data
4
bed bed3+
2
bigWig
File set status
4
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
7
mature neutrophil
5
CD14-positive, CD16-negative classical monocyte
4
alternatively activated macrophage
4
endothelial cell
4
pancreatic alpha cell
4
pancreatic beta cell
4
pancreatic delta cell
3
CD4-positive, alpha-beta T cell
3
CD8-positive, alpha-beta T cell
3
inflammatory macrophage
3
macrophage
2
activated CD4-positive, alpha-beta T cell
2
activated CD8-positive, alpha-beta T cell
2
conventional dendritic cell
2
erythroblast
2
fibroblast
2
liver
2
megakaryocyte
2
memory B cell
2
monocyte
2
naive B cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
natural killer cell
2
natural killer cell mediated cytotoxicity
2
non-classical monocyte
2
pancreatic acinar cell
2
pancreatic ductal cell
2
pancreatic polypeptide-secreting cell
2
pancreatic stellate cell
2
plasmacytoid dendritic cell
2
regulatory T cell
2
smooth muscle cell
2
stellate neuron
1
BL-2 cell
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
DG-75 cell
1
JVM-2 cell
1
KARPAS-422 cell
1
SUDHL5
1
T cell
1
U-266 cell
1
Z-138
1
leukocyte
1
mature eosinophil
1
mesenchymal stem cell
1
skeletal muscle satellite cell
1
type I muscle cell
1
type II muscle cell
Organ
4
epithelium
Life stage
1
adult
1
unknown
Date released
16
November, 2021
10
February, 2021
9
September, 2022
6
February, 2024
4
August, 2021
3
March, 2020
2
January, 2020
2
January, 2021
2
May, 2021
2
May, 2022
1
August, 2017
1
February, 2020
1
February, 2023
1
January, 2022
1
June, 2020
1
May, 2020
1
October, 2022
Software used
3
macs
1
cicero
Lab
2
Kyle Gaulton, UCSD
1
AMP-T2D consortium
1
Bing Ren, UCSD
Project
2
AMP
2
T1D
RFA
2
T1D
1
AMP
1
AMP2
Showing 4 of 4 results
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Download
FileSet
DSR897TMQ
released
Annotation file set
: Accessible chromatin from snATAC-seq of endothelial cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR426RPD
released
Annotation file set
: Accessible chromatin annotation of Endothelial cells from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR305VNP
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of endothelial
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR579LZJ
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of endothelial
Lab:
Kyle Gaulton, UCSD
Project:
T1D