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Schema
Citing CMDGA
Clear Filters
Annotation type
accessible chromatin
2
caQTL
2
variant allelic effects
1
target gene predictions
Annotation Category
4
Genetic variant effects
1
Target gene links
Annotation type Category
35
ChIP-seq
21
DNase-seq
10
RNA-seq
8
ATAC-seq
6
scRNA-seq
5
snATAC-seq
3
RNA microarray
2
Expression arrays
1
H3K27ac ChIP-Seq
1
HiC
1
pCHi-C
1
snRNA-seq
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
5
primary cell
Biosample term
6
fibroblast
5
endothelial cell
5
macrophage
4
pancreatic alpha cell
4
pancreatic beta cell
4
pancreatic delta cell
3
enterocyte
3
myofibroblast cell
3
smooth muscle cell
2
Schwann cell
2
T cell
2
basal cell
2
epithelial cell of esophagus
2
goblet cell
2
pancreatic acinar cell
2
pancreatic ductal cell
2
pancreatic polypeptide-secreting cell
2
skeletal muscle fiber
2
vascular associated smooth muscle cell
1
CD8-positive, alpha-beta T cell
1
Satellite Cells, Skeletal Muscle
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
adipocyte
1
bronchial goblet cell
1
cardiac muscle cell
1
cell
1
conventional dendritic cell
1
cortical cell of adrenal gland
1
fibroblast of the aortic adventitia
1
granulosa cell
1
hepatocyte
1
keratinocyte
1
luminal epithelial cell of prostatic duct
1
lymphocyte of B lineage
1
mammary gland epithelial cell
1
mast cell
1
megakaryocyte
1
memory B cell
1
mesenchymal stem cell
1
mesothelial cell
1
monocyte
1
naive B cell
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
naive thymus-derived CD8-positive, alpha-beta T cell
1
natural killer cell
1
natural killer cell mediated cytotoxicity
1
non-classical monocyte
1
pancreatic endocrine cell
1
pancreatic stellate cell
1
parietal cell
1
peptic cell
1
plasmacytoid dendritic cell
1
regulatory T cell
1
smooth muscle cell of the coronary artery
1
stellate neuron
1
thyroid follicular cell
1
type I muscle cell
1
type II muscle cell
1
type II pneumocyte
Organ
5
epithelium
Date released
2
February, 2024
1
February, 2023
1
January, 2021
1
October, 2022
Software used
2
deltasvm
2
rasqual
1
cicero
1
eigenmt
Lab
2
Bing Ren, UCSD
1
AMP-T2D consortium
1
Kyle Gaulton, UCSD
1
Stephen Parker, UMich
Project
4
AMP
1
T1D
RFA
3
AMP
1
AMP2
1
T1D
annotation_type!
accessible chromatin
Showing 5 of 5 results
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Download
FileSet
DSR375DYB
released
Annotation file set
: Chromatin accessibility QTLs in endothelial cells passing genome-wide multiple testing correction (5% FDR) of ATAC-seq in 35 human coronary artery patients
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR259FVK
released
Annotation file set
: Chromatin site QTLs of endothelial cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR035TOY
released
Annotation file set
: Variant allelic effects annotation of Endothelial cells (sub-type2) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR772CSM
released
Annotation file set
: Variant allelic effects annotation of Endothelial cells from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR305VNP
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of endothelial
Lab:
Kyle Gaulton, UCSD
Project:
T1D