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Schema
Citing CMDGA
Clear Filters
Annotation type
4
gene expression
Annotation Category
4
Gene expression levels
Annotation type Category
3
scRNA-seq
1
snRNA-seq
Available data
bed bed3+
13
bigWig
3
tsv
3
txt
File set status
4
released
Genome assembly (visualization)
1
hg19
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
7
induced pluripotent stem cell
7
kidney
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
hepatocyte
5
pancreatic acinar cell
5
pancreatic ductal cell
4
endothelial cell
4
endothelial cell of hepatic sinusoid
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha cell
4
pancreatic alpha+beta cell
4
pancreatic beta cell
4
pancreatic cycling alpha cell
4
pancreatic delta cell
4
pancreatic endothelial cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
pancreatic stellate cell
3
Cycling Mononuclear Phagocyte
3
Mast Cell
3
cartilage tissue
3
pancreatic quiescent stellate cell
2
EndoC_BH1
2
skeletal muscle fiber
2
subcutaneous adipose tissue
1
B-1 B cell
1
B-2 B cell
1
CD8-positive, alpha-beta T cell
1
Pancreatic islets
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
T-helper 17 cell
1
adipocyte
1
alternatively activated macrophage
1
dendritic cell
1
effector CD8-positive, alpha-beta T cell
1
embryonic stem cell
1
epithelial cell of proximal tubule
1
glial cell
1
glomerular endothelial cell
1
inflammatory macrophage
1
kidney connecting tubule epithelial cell
1
kidney distal convoluted tubule epithelial cell
1
kidney granular cell
1
kidney inner medulla collecting duct epithelial cell
1
kidney interstitial fibroblast
1
kidney loop of Henle ascending limb epithelial cell
1
kidney loop of Henle thin descending limb epithelial cell
1
leukocyte
1
macrophage
1
mesenchymal stem cell
1
natural killer cell
1
neural cell
1
neuron cell of Hypothalamus (neuron)
1
renal alpha-intercalated cell
1
renal beta-intercalated cell
1
renal principal cell
1
skeletal muscle satellite cell
1
smooth muscle cell
1
synovial joint
1
type I muscle cell
1
type II muscle cell
Organ
4
epithelium
Life stage
3
adult
Date released
3
August, 2021
1
February, 2024
Software used
4
r
3
seurat
1
deeptools
1
samtools
1
umitools
Lab
AMP-T2D consortium
3
Katalin Susztak, Upenn
1
Stephen Parker, UMich
Project
4
AMP
RFA
4
AMP2
lab.title!
AMP-T2D consortium
files.file_type!
bed bed3+
Showing 4 of 4 results
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Download
FileSet
DSR239ZHY
released
Annotation file set
: Gene expression of kidney from Katalin Susztak FNIH Project scRNA-seq for endothelial cell cluster 3
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR555DIA
released
Annotation file set
: Gene expression of kidney from Katalin Susztak FNIH Project scRNA-seq for endothelial cell cluster 2
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR901DMS
released
Annotation file set
: Gene expression of kidney from Katalin Susztak FNIH Project scRNA-seq for endothelial cell cluster 1
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR251UJD
released
Annotation file set
: Cell type gene expression mean TPM and bw of endothelial cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP