Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
accessible chromatin
2
caQTL
1
target gene predictions
Annotation Category
3
cis-regulatory elements
2
Genetic variant effects
1
Target gene links
Annotation type Category
6
scRNA-seq
6
snATAC-seq
4
RNA-seq
3
ChIP-seq
1
ATAC-seq
1
snRNA-seq
Available data
6
bed bed3+
2
bigWig
File set status
6
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
6
Homo sapiens
Biosample type
6
primary cell
Biosample term
8
pancreatic alpha cell
8
pancreatic beta cell
8
pancreatic delta cell
6
endothelial cell
4
macrophage
4
pancreatic polypeptide-secreting cell
3
mesenchymal stem cell
3
natural killer cell
3
pancreatic acinar cell
3
pancreatic ductal cell
3
pancreatic stellate cell
3
smooth muscle cell
3
type I muscle cell
3
type II muscle cell
2
CD8-positive, alpha-beta T cell
2
activated CD4-positive, alpha-beta T cell
2
activated CD8-positive, alpha-beta T cell
2
capillary endothelial cell
2
conventional dendritic cell
2
extracellular matrix secreting cell
2
leukocyte
2
megakaryocyte
2
memory B cell
2
monocyte
2
naive B cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
natural killer cell mediated cytotoxicity
2
non-classical monocyte
2
plasmacytoid dendritic cell
2
regulatory T cell
2
skeletal muscle fiber
2
skeletal muscle satellite cell
2
stellate neuron
1
B cell
1
T cell
1
adipocyte
1
basal cell
1
ciliated cell
1
club cell
1
endothelial cell of artery
1
endothelial cell of lymphatic vessel
1
erythrocyte
1
fibroblast of the aortic adventitia
1
glial cell
1
kidney distal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
myofibroblast cell
1
neural cell
1
neuroendocrine cell
1
pancreatic endothelial cell
1
pancreatic immune cell
1
pericyte cell
1
proximal epiphysis of femur
1
proximal tubule cells with injury markers
1
smooth muscle cell of the coronary artery
1
type I pneumocyte
1
type II pneumocyte
Organ
6
epithelium
Life stage
1
unknown
Date released
2
January, 2021
1
February, 2023
1
February, 2024
1
May, 2022
1
October, 2022
Software used
3
macs
2
rasqual
1
cicero
1
eigenmt
Lab
Bing Ren, UCSD
2
AMP-T2D consortium
2
Kyle Gaulton, UCSD
2
Stephen Parker, UMich
Project
4
AMP
2
T1D
RFA
2
AMP
2
AMP2
2
T1D
lab.title!
Bing Ren, UCSD
Showing 6 of 6 results
table-tab-icon
matrix-icon
Download
FileSet
DSR375DYB
released
Annotation file set
: Chromatin accessibility QTLs in endothelial cells passing genome-wide multiple testing correction (5% FDR) of ATAC-seq in 35 human coronary artery patients
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR897TMQ
released
Annotation file set
: Accessible chromatin from snATAC-seq of endothelial cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR259FVK
released
Annotation file set
: Chromatin site QTLs of endothelial cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR264NGG
released
Annotation file set
: Cell type chromatin broad peaks and bw of endothelial cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR305VNP
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of endothelial
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR579LZJ
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of endothelial
Lab:
Kyle Gaulton, UCSD
Project:
T1D