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Schema
Citing CMDGA
Clear Filters
Annotation type
8
gene expression
Annotation Category
19
cis-regulatory elements
8
Gene expression levels
7
Target gene links
5
Genetic variant effects
Annotation type Category
5
scRNA-seq
2
RNA-seq
1
snRNA-seq
Available data
7
tsv
3
txt
File set status
8
released
Genome assembly (visualization)
1
hg19
Organism
8
Homo sapiens
Biosample type
8
primary cell
Biosample term
16
epithelial cell of proximal tubule
16
induced pluripotent stem cell
14
glomerular endothelial cell
13
hepatocyte
11
cardiomyocytes
9
extended pluripotent stem (EPS) cells
9
islet of Langerhans
9
progenitor cell of endocrine pancreas
8
H1-hESC
8
endothelial cell
8
pancreatic ductal cell
7
kidney
7
kidney loop of Henle thin ascending limb epithelial cell
7
neural progenitor cell
6
kidney interstitial cell
6
subcutaneous adipose tissue
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
T-helper 1 cell
5
T-helper 17 cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
glomerular visceral epithelial cell
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
mesangial cell
5
pancreatic acinar cell
5
pancreatic alpha cell
5
pancreatic beta cell
5
pancreatic delta cell
5
pancreatic stellate cell
5
regulatory T cell
4
bone tissue
4
cardiac precursors (cardiac muscle cell)
4
endothelial cell of hepatic sinusoid
4
kidney connecting tubule epithelial cell
4
kidney distal convoluted tubule epithelial cell
4
nephron progenitor
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic endothelial cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
3
Cycling Mononuclear Phagocyte
3
EndoC_BH1
3
Mast Cell
3
S-shaped body
3
adipose tissue
3
adult endothelial progenitor cell
3
cardiomyocytes (cardiac muscle cell)
3
heart
3
hepatocyte(AFP)
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
pancreatic quiescent stellate cell
3
visceral abdominal adipose tissue
2
Kupffer cell
2
adipocyte
2
body of pancreas
2
cerebellum
2
frontal cortex
2
gamma-delta T cell
2
kidney inner medulla collecting duct intercalated cell
2
leukocyte
2
liver
2
natural killer cell
2
omental fat pad
2
osteoblast
2
renal vesicle
2
right atrium auricular region
2
skeletal muscle fiber
2
skeletal muscle satellite cell
2
smooth muscle cell of the coronary artery
2
tibial nerve
2
vascular associated smooth muscle cell
1
Ammon's horn
1
B-1 B cell
1
B-1a B cell
1
B-2 B cell
1
C1 segment of cervical spinal cord
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
CD8-positive, alpha-beta T cell
1
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
T-helper 2 cell
1
adrenal gland
1
alpha-beta T cell
1
alternatively activated macrophage
1
amygdala
1
anterior cingulate cortex
1
aorta
1
aorta wall
1
aortic valve
1
ascending aorta
1
astrocyte
1
bladder
1
brain
1
breast - mammary tissue
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
caudate nucleus
1
cells - EBV-transformed lymphocytes
1
cells - cultured fibroblasts
1
central memory CD4-positive, alpha-beta T cell
1
central memory CD8-positive, alpha-beta T cell
1
cerebellum (Hemisphere)
1
cervix - ectocervix
1
cervix - endocervix
1
cholangiocyte
1
colon - sigmoid
1
colon - transverse
1
coronary artery
1
dendritic cell
1
diencephalon
1
dorsolateral prefrontal cortex
1
effector CD8-positive, alpha-beta T cell
1
effector memory CD4-positive, alpha-beta T cell
1
effector memory CD8-positive, alpha-beta T cell
1
endothelial cell of coronary artery
1
epithelial cell of distal tubule
1
erythroid lineage cell
1
esophagus - gastroesophageal junction
1
esophagus - mucosa
1
esophagus - muscularis
1
excitatory neuron
1
fallopian tube
1
gastrocnemius medialis(Muscle - Skeletal)
1
glial cell
1
heart left ventricle
1
heart right ventricle
1
hepatic stellate cell
1
hippocampal neuron
1
hypothalamus
1
inflammatory macrophage
1
kidney - cortex
1
kidney - medulla
1
kidney epithelial cell
1
kidney glomerular epithelial cell
1
kidney granular cell
1
kidney inner medulla collecting duct epithelial cell
1
kidney interstitial fibroblast
1
kidney loop of Henle ascending limb epithelial cell
Organ
8
epithelium
Life stage
6
adult
1
fetal
Date released
4
February, 2021
3
August, 2021
May, 2021
1
February, 2024
Software used
8
r
3
seurat
1
deeptools
1
samtools
1
umitools
Lab
4
AMP-T2D consortium
3
Katalin Susztak, Upenn
1
Stephen Parker, UMich
Project
8
AMP
RFA
4
AMP
4
AMP2
month_released!
May, 2021
Showing 8 of 8 results
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Download
FileSet
DSR239ZHY
released
Annotation file set
: Gene expression of kidney from Katalin Susztak FNIH Project scRNA-seq for endothelial cell cluster 3
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR555DIA
released
Annotation file set
: Gene expression of kidney from Katalin Susztak FNIH Project scRNA-seq for endothelial cell cluster 2
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR901DMS
released
Annotation file set
: Gene expression of kidney from Katalin Susztak FNIH Project scRNA-seq for endothelial cell cluster 1
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR251UJD
released
Annotation file set
: Cell type gene expression mean TPM and bw of endothelial cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR946TAA
released
Annotation file set
: Gene expression levels (pseudobulks UMIs) of End from GSE114530 scRNAseq fetal kidney
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR661VCO
released
Annotation file set
: Gene expression levels (pseudobulks UMI) of liver Portal Endothelial Cells from GSE115469 scRNA-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR365BTF
released
Annotation file set
: Gene expression levels (pseudobulks UMI) of liver Central Venous LSECs from GSE115469 scRNA-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR308YEA
released
Annotation file set
: Gene expression levels (pseudobulks UMI) of liver Peripotal LSECs from GSE115469 scRNA-seq
Lab:
AMP-T2D consortium
Project:
AMP