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Schema
Citing CMDGA
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Annotation type
1
accessible chromatin
Annotation Category
1
cis-regulatory elements
Annotation type Category
1
snATAC-seq
Available data
1
bam
1
bed bed3+
1
bed gappedPeak
1
xls
File set status
1
released
Genome assembly (visualization)
1
hg19
Organism
1
Homo sapiens
Biosample type
1
primary cell
Biosample term
54
heart
48
brain
48
muscle of arm
45
lung
42
placenta
42
stomach
39
left lung
39
muscle of back
39
muscle of leg
39
small intestine
38
large intestine
36
kidney
33
right lung
33
thymus
30
right kidney
27
left kidney
27
renal cortex interstitium
27
renal pelvis
24
adrenal gland
21
spinal cord
18
CD4-positive, alpha-beta memory T cell
15
trophoblast cell
12
chorionic villus
12
foreskin keratinocyte
12
muscle of trunk
12
neural progenitor cell
9
T-helper 17 cell
9
chorion membrane
9
common myeloid progenitor, CD34-positive
9
heart left ventricle
9
neurosphere
9
retina
7
HepG2
6
22Rv1
6
B cell
6
CD8-positive, alpha-beta memory T cell
6
NAMALWA cell
6
SK-N-DZ
6
SK-N-SH
6
bronchial epithelial cell
6
dermis lymphatic vessel endothelial cell
6
endodermal cell
6
endothelial cell of umbilical vein
6
epithelial cell of prostate
6
eye
6
fibroblast of cardiac tissue
6
fibroblast of dermis
6
fibroblast of lung
6
foreskin fibroblast
6
heart right ventricle
6
hepatocyte
6
keratinocyte
6
left renal cortex interstitium
6
left renal pelvis
6
limb
6
liver
6
neutrophil
6
right renal cortex interstitium
6
right renal pelvis
6
skin fibroblast
6
spleen
6
tongue
6
trophoblast
3
A673
3
AG04449 cell
3
AG04450 cell
3
BE(2)-C
3
BJ cell
3
CD14-positive monocyte
3
CD1c-positive myeloid dendritic cell
3
CMK
3
CWRU1
3
DND-41
3
Daoy
3
EH
3
EL
3
ELF-1
3
ELR
3
ES-I3
3
G401
3
GM03348
3
GM06990
3
GM08714
3
GM12864
3
GM12865
3
GM12891
3
GM12892
3
GM18507
3
H1-hESC
3
H7-hESC
3
H9
3
HEK293
3
HEK293T
3
HK-2 cell
3
HTR-8/Svneo
3
HUES48
3
HUES6
3
HUES64
3
IMR-90
3
KOPT-K1
3
L1-S8
3
L1-S8R
3
MG63
3
NCI-H460 cell
3
NT2-D1 cell
3
PC-9
3
Panc1
3
SJCRH30
3
SK-N-MC
3
T cell
3
T-helper 1 cell
3
T-helper 2 cell
3
UCSF-4
3
WERI-Rb-1
3
WI38
3
adipocyte
3
amnion
3
amnion mesenchymal stem cell
3
amniotic stem cell
3
aortic endothelial cell
3
arm bone
3
astrocyte
3
astrocyte of the cerebellum
3
astrocyte of the hippocampus
3
astrocyte of the spinal cord
3
brain microvascular endothelial cell
3
cardiac mesoderm primordium
3
cardiac muscle cell
3
choroid plexus epithelial cell
3
colon carcinoma
3
colon epithelial cell
3
dermis blood vessel endothelial cell
3
ectodermal cell
3
embryonic facial prominence
3
endocrine pancreas
3
epidermal melanocyte
3
epithelial cell of amnion
3
epithelial cell of esophagus
3
epithelial cell of proximal tubule
3
femur
3
fibroblast of gingiva
3
fibroblast of mammary gland
3
fibroblast of peridontal ligament
3
fibroblast of pulmonary artery
3
fibroblast of the aortic adventitia
3
fibroblast of the conjunctiva
3
fibroblast of villous mesenchyme
3
foreskin melanocyte
3
germinal center
3
germinal matrix
3
glomerular endothelial cell
3
glomerular visceral epithelial cell
3
hematopoietic multipotent progenitor cell
3
iPS DF 19.11
3
iPS DF 19.7
3
iPS DF 4.7 Cell Line
3
iPS DF 6.9
3
iris pigment epithelial cell
3
islet precursor cell
3
kidney capillary endothelial cell
3
kidney epithelial cell
3
left cardiac atrium
3
leg bone
3
lung microvascular endothelial cell
3
lymphocyte
3
mammary gland epithelial cell
3
medulloblastoma
3
mesenchymal stem cell
3
mesendoderm
3
mesodermal cell
3
mononuclear cell
3
naive T cell
3
neural cell
3
neuron
3
non-pigmented ciliary epithelial cell
3
osteoblast
3
ovary
3
pericyte cell
3
psoas muscle
3
pulmonary artery endothelial cell
3
regular cardiac myocyte
3
regulatory T cell
3
renal cortical epithelial cell
3
retinal pigment epithelial cell
3
sigmoid colon
3
skeletal muscle cell
3
skeletal muscle myoblast
3
skeletal muscle tissue
3
skin of body
3
smooth muscle cell
3
smooth muscle cell of the brain vasculature
3
stromal cell of bone marrow
3
testis
3
umbilical cord
3
urinary bladder
3
urothelium cell line
1
leukemic stem cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
pancreatic delta cell
Organ
1
epithelium
1
pancreas
Life stage
1
unknown
Date released
18
November, 2021
6
February, 2024
6
January, 2021
4
February, 2021
4
March, 2023
1
August, 2018
1
February, 2023
1
May, 2021
1
May, 2022
1
October, 2022
1
September, 2022
Software used
1
macs
Lab
1
AMP-T2D consortium
Project
1
AMP
RFA
1
AMP
relevant_life_stage!
adult
Showing 1 of 1 results
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Download
FileSet
DSR938VDA
released
Annotation file set
: Accessible chromatin from snATAC-seq of alpha cells from human pancreatic islet samples
Lab:
AMP-T2D consortium
Project:
AMP