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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
Annotation Category
1
cis-regulatory elements
Available data
1
bed bed3+
1
bigWig
File set status
1
released
Genome assembly (visualization)
1
GRCh38
1
hg19
Organism
1
Homo sapiens
Biosample type
30
primary cell
1
in vitro differentiated cells
1
tissue
Biosample term
85
heart
73
brain
72
kidney
67
muscle of arm
64
stomach
62
lung
60
placenta
58
muscle of leg
56
large intestine
55
small intestine
54
muscle of back
52
left lung
48
thymus
45
right lung
42
right kidney
40
renal cortex interstitium
40
renal pelvis
37
adrenal gland
36
left kidney
31
spinal cord
27
islet of Langerhans
24
liver
19
heart left ventricle
17
muscle of trunk
17
retina
16
chorionic villus
14
heart right ventricle
14
spleen
12
left cardiac atrium
12
left renal cortex interstitium
12
left renal pelvis
12
right renal pelvis
11
right renal cortex interstitium
11
trophoblast
10
chorion membrane
9
eye
9
testis
9
tongue
8
adipose tissue
8
limb
8
ovary
8
pancreas
8
psoas muscle
7
coronary artery
7
sigmoid colon
7
skeletal muscle tissue
6
prostate gland
6
skin of body
6
umbilical cord
5
germinal matrix
5
right atrium auricular region
5
tibial artery
4
amnion
4
caudate nucleus
4
cortex of kidney
4
embryonic facial prominence
4
femur
4
frontal cortex
4
layer of hippocampus
4
occipital lobe
4
putamen
4
subcutaneous adipose tissue
4
substantia nigra
4
tibial nerve
4
urinary bladder
3
arm bone
3
cerebellum
3
endocrine pancreas
3
germinal center
3
leg bone
3
midbrain
3
prefrontal cortex
3
temporal lobe
3
thyroid gland
3
transverse colon
3
upper lobe of left lung
3
uterus
2
hindlimb muscle
2
muscle of leg
2
Ammon's horn
2
amygdala
2
aorta
2
body of pancreas
2
breast carcinoma
2
breast epithelium
2
chorion
2
colonic mucosa
2
dorsolateral prefrontal cortex
2
endometrium cancer
2
esophagus
2
esophagus muscularis mucosa
2
first pancreatic bud
2
forelimb muscle
2
gastrocnemius medialis
2
globus pallidus
2
hypothalamus
2
kidney epithelium
2
mammary gland
2
nucleus accumbens
2
pancreatic ductal cell
2
pancreatic stellate cell
2
pituitary gland
2
placental basal plate
2
respiratory system smooth muscle
2
right cardiac atrium
2
skin of forearm
2
skin of prepuce of penis
2
superior temporal gyrus
2
thoracic aorta
2
tissue
1
left kidney
1
omental fat pad
1
Brodmann (1909) area 9
1
Crypt of Lieberkuhn
1
Pancreatic islets
1
Peyer's patch
1
Schwann cell
1
abdominal aorta artery
1
anterior cingulate cortex
1
anterior parahippocampal gyrus
1
aortic valve
1
arcuate nucleus of hypothalamus
1
ascending aorta
1
bed nucleus of stria terminalis
1
beige adipocyte
1
bladder (urinary bladder)
1
breast
1
caput epididymis
1
cardiac ventricle
1
cardiogenic mesoderm
1
cartilage tissue
1
cerebellar hemisphere
1
cerebellum (Hemisphere)
1
cingulate gyrus
1
circle of Willis
1
claustrum of brain
1
colon
1
colon sigmoid
1
corneal epithelium
1
cortex
1
crypt of Lieberkuhn
1
dentate nucleus
1
diencephalon
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
dorsal lateral geniculate nucleus
1
duodenal mucosa
1
dura mater
1
endometrium
1
endothelial cell
1
entorhinal cortex
1
epididymis
1
esophagus mucosa
1
esophagus squamous epithelium
1
fallopian tube
1
fetal heart
1
frontal pole
1
gastric (mucosa of stomach)
1
glomerular epithelium
1
gyrus rectus
1
hindlimb muscle
1
inferior parietal cortex
1
intestinal epithelium
1
left leg bone
1
locus ceruleus
1
medial dorsal nucleus of thalamus
1
medulla oblongata
1
medulloblastoma
1
metanephros
1
mid-frontal lobe
1
minor salivary gland
1
mitral valve
1
morula
1
mucosa of rectum
1
myelencephalon
1
nucleus of ventral thalamus
1
pancreatic A cell
1
pancreatic D cell
1
pancreatic PP cell
1
pancreatic acinar cell
1
pancreatic adenocarcinoma
1
pancreatic carcinoma
1
paraventricular nucleus of hypothalamus
1
parietal lobe
1
pineal body
1
piriform cortex
1
pons
1
pontine tegmentum
1
precentral gyrus
1
precuneus cortex
1
proximal epiphysis
1
proximal epiphysis of femur
1
proximal epiphysis of humerus
1
proximal epiphysis of tibia
1
pulmonary valve
1
pulvinar nucleus
1
raphe nuclei
1
rectum smooth muscle tissue
Organ
1
epithelium
Date released
1
February, 2024
Software used
1
macs
Lab
1
Kyle Gaulton, UCSD
Project
1
AMP
RFA
1
AMP
relevant_life_stage!
adult
relevant_life_stage!!
adult
Showing 1 of 1 results
table-tab-icon
matrix-icon
Download
FileSet
DSR369PUU
released
Annotation file set
: accessible chromatin annotation from scATAC-seq of Endothelial
Lab:
Kyle Gaulton, UCSD
Project:
AMP