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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
4
accessible chromatin
2
binding sites
1
histone modifications
Annotation Category
7
cis-regulatory elements
Annotation type Category
3
ChIP-seq
3
snATAC-seq
1
ATAC-seq
Available data
7
bed bed3+
3
bigWig
File set status
7
released
Genome assembly (visualization)
19
hg19
GRCh38
Organism
7
Homo sapiens
Biosample type
7
primary cell
Biosample term
32
CD8-positive, alpha-beta T cell
24
retina
20
breast cancer cell
20
pigmented layer of retina
12
neuroblastoma cell
11
embryonic stem cell
11
gastric cancer cell
10
Rhabdomyosarcoma
10
diffuse intrinsic pontine glioma
9
EndoC_BH1
9
liposarcoma
9
retinal pigment epithelial cell
8
T-cell acute lymphoblastic leukemia
8
esophageal adenocarcinoma
8
fibroblast cell line
8
monocyte
8
neuroblastoma cell line
7
B-lymphoblastoid cell line
7
acute myeloid leukemia
7
adipocyte
7
chondrocyte
7
endothelial cell
7
hESC cell
7
keratinocyte
7
mammary epithelial cell
7
melanoma
7
neural progenitor cell
7
neuronal stem cell
6
Chondroid Chordoma
6
Rh-4 cell
6
SGBS preadipocytes
6
glioblastoma multiforme cancer stem cell
6
lymphoblastoid cell line
6
osteoblast
6
osteosarcoma
6
pancreatic ductal cell
6
prostate cancer cell line
5
Ewing sarcoma
5
Jurkat
5
MCF-7
5
RS4-11 cell
5
Th1 cell
5
brain
5
bronchial epithelial cell
5
dermal fibroblast
5
diffuse large B-cell lymphoma
5
esophageal squamous cell carcinoma
5
fibroblast of cardiac tissue
5
foreskin fibroblast
5
liver
5
melanoma cell
5
mesenchymal stem cell
5
regulatory T cell
5
squamous cell lung carcinoma
5
triple-negative breast cancer
4
B cell
4
B-lymphocyte
4
COLO205
4
HS-SY-2 cell
4
Mantle cell lymphoma
4
Tumor-derived cell line
4
acute myeloid leukemia cell
4
adipose-derived stem cell
4
cardiac muscle cell
4
colon adenocarcinoma
4
erythroid cell
4
erythroid progenitor cell
4
glioblastoma cell
4
glioma cell
4
glutamatergic neuron
4
heart
4
hepatic stellate cell
4
immortal neural cell line cell
4
islet of Langerhans
4
kidney
4
leukemic stem cell
4
lung fibroblast cell line
4
macrophage
4
mammary gland epithelial cell
4
metastatic melanoma
4
natural killer cell
4
pancreas
4
pancreatic alpha cell
4
pancreatic cell line
4
pancreatic delta cell
4
placenta
4
preadipocyte
4
prostate gland
4
rhabdomyosarcoma cell
4
spinal cord
4
synovial sarcoma cell
4
tracheal epithelial cell
3
786-O cell
3
A-673 cell
3
A549
3
AG04449 cell
3
AG04450 cell
3
AG09309 cell
3
AG09319 cell
3
AG10803 cell
3
BE(2)-C
3
BJ cell
3
CD1c-positive myeloid dendritic cell
3
CMK
3
COLO-320 cell
3
Caco-2 cell
3
D341 Med cell
3
G-401 cell
3
GM06990
3
GM12864
3
GM12865
3
GM12878
3
GM19240
3
GM23248
3
H1-hESC
3
HAC cell
3
HAP-1
3
HBMEC cell
3
HCT-116 cell
3
HEK293
3
HL-60
3
HT-29
3
HeLa cell
3
HepG2
3
HuH-7
3
IMR-90
3
Ishikawa
3
K562
3
KARPAS-422 cell
3
Kasumi-1
3
LHCN-M2
3
LNCAP
3
LoVo cell
3
MDA-MB-231 cell
3
MG63
3
MM.1S
3
MOLM-13 cell
3
Myoblasts
3
NAMALWA cell
3
NB-4 cell
3
NCCIT cell
3
NHBE cell
3
NHDF cell
3
NHEK
3
NT2-D1 cell
3
Normal Human Astrocytes
3
OCI-AML3
3
OCI-LY7
3
PA-TU-8988T cell
3
PANC-1 cell
3
PC-3
3
PC-9
3
REH cell
3
RKO
3
RPMI8226
3
RWPE1
3
SAEC
3
SK-N-MC
3
SK-N-SH_RA
3
SW480
3
Saos-2 cell
3
T-47D cell
3
Th17 cell
3
U-266 cell
3
U-87 MG
3
U2OS
3
U937
3
WERI-Rb-1
3
WI-38 cell
3
ZR-75-1 cell
3
adipose tissue
3
aortic adventitial fibroblast
3
aortic endothelial cell
3
bone marrow cell
3
cardiac myocyte cell derived cell line
3
choroid plexus epithelial cell
3
chronic lymphocytic leukemia cell
3
colon cancer cell line
3
cortex of kidney
3
epithelial cell of prostate
3
epithelial ovarian cancer cell
3
esophageal epithelial cell
3
fibroblast
3
fibroblast of mammary gland
3
fibroblast of pulmonary artery
3
fibroblast of villous mesenchyme
3
foreskin keratinocyte
3
foreskin melanocyte
3
glial cell
3
hESC H9
3
hematopoietic cell
3
hematopoietic multipotent progenitor cell
3
hepatocyte
3
iPS DF 4.7 Cell Line
3
lymphoblast
3
mesendoderm
3
midbrain
3
mononuclear cell of bone marrow
3
multiple myeloma cell line
3
naive thymus-derived CD4-positive, alpha-beta T cell
Organ
7
epithelium
Life stage
1
adult
1
unknown
Date released
3
February, 2021
1
August, 2021
1
February, 2024
1
January, 2021
1
May, 2022
Software used
10
r
7
macs
3
seurat
2
deltasvm
1
cicero
1
deeptools
1
eigenmt
1
qTLtools
1
rasqual
1
samtools
1
umitools
Lab
4
AMP-T2D consortium
1
Katalin Susztak, Upenn
1
Kyle Gaulton, UCSD
1
Stephen Parker, UMich
Project
6
AMP
1
T1D
RFA
4
AMP
2
AMP2
1
T1D
assembly!
GRCh38
Showing 7 of 7 results
table-tab-icon
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Download
FileSet
DSR897TMQ
released
Annotation file set
: Accessible chromatin from snATAC-seq of endothelial cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR493PXL
released
Annotation file set
: Accessible chromatin from Katalin Susztak 75kidney Project of Endothelial cells
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR296FOQ
released
Annotation file set
: Histone modifications annotation for Cardiovascular Endothelial_Cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR406JQN
released
Annotation file set
: Binding sites annotation for Cardiovascular Primary_endothelial_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR388QAH
released
Annotation file set
: Binding sites annotation for Cardiovascular Endothelial_Cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR264NGG
released
Annotation file set
: Cell type chromatin broad peaks and bw of endothelial cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR579LZJ
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of endothelial
Lab:
Kyle Gaulton, UCSD
Project:
T1D