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Schema
Citing CMDGA
Clear Filters
Annotation type
15
gene expression
2
candidate regulatory elements
1
accessible chromatin
1
binding sites
1
chromatin state
1
target gene predictions
1
variant allelic effects
Annotation Category
3
cis-regulatory elements
Annotation type Category
3
DNase-seq
2
ChIP-seq
Available data
3
bed bed3+
1
bigWig
File set status
3
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
43
stomach
42
heart
34
muscle of arm
33
lung
32
kidney
31
brain
30
small intestine
29
adrenal gland
29
muscle of leg
29
retina
28
large intestine
28
muscle of back
27
common myeloid progenitor, CD34-positive
27
placenta
26
left lung
23
right lung
22
A549
21
renal cortex interstitium
21
renal pelvis
21
right kidney
21
thymus
20
hematopoietic multipotent progenitor cell
20
pigmented layer of retina
18
B cell
18
left kidney
17
monocyte
17
spleen
16
liver
16
spinal cord
15
neural progenitor cell
14
CD4-positive, alpha-beta memory T cell
14
heart left ventricle
12
foreskin keratinocyte
11
sigmoid colon
10
CD8-positive, alpha-beta T cell
10
MCF-7
10
pancreas
10
retinal pigment epithelial cell
10
trophoblast cell
9
T-helper 1 cell
9
adipose tissue
9
gastrocnemius medialis
9
ovary
9
regulatory T cell
9
thyroid gland
9
tibial nerve
9
transverse colon
8
CD14-positive monocyte
8
CD4-positive, alpha-beta T cell
8
CD8-positive, alpha-beta memory T cell
8
EndoC_BH1
8
K562
8
Peyer's patch
8
adipocyte
8
body of pancreas
8
cardiac muscle cell
8
chorionic villus
8
endothelial cell of umbilical vein
8
foreskin fibroblast
8
muscle of trunk
8
natural killer cell
8
psoas muscle
8
testis
8
upper lobe of left lung
7
H9
7
T-helper 17 cell
7
T-helper 2 cell
7
caudate nucleus
7
endocrine pancreas
7
esophagus squamous epithelium
7
heart right ventricle
7
left renal cortex interstitium
7
left renal pelvis
7
mononuclear cell
7
neurosphere
7
omental fat pad
7
osteoblast
7
right renal pelvis
6
SGBS preadipocytes
6
breast epithelium
6
coronary artery
6
dermis blood vessel endothelial cell
6
esophagus muscularis mucosa
6
fibroblast of lung
6
islet of Langerhans
6
layer of hippocampus
6
lower leg skin
6
mesenchymal stem cell
6
right atrium auricular region
6
right renal cortex interstitium
6
skeletal muscle myoblast
6
skeletal muscle tissue
6
tibial artery
5
HeLa-S3
5
SK-N-DZ
5
T cell
5
WI38
5
ascending aorta
5
bronchial epithelial cell
5
chondrocyte
5
embryonic stem cell
5
epithelial cell of prostate
5
eye
5
fibroblast of cardiac tissue
5
foreskin melanocyte
5
gastroesophageal sphincter
5
hepatocyte
5
kidney tubule cell
5
parathyroid adenoma
5
prostate gland
5
subcutaneous abdominal adipose tissue
5
substantia nigra
5
temporal lobe
5
thoracic aorta
5
tongue
5
trophoblast
4
22Rv1
4
Ammon's horn
4
HEK293
4
HepG2
4
SK-N-SH
4
T-cell
4
angular gyrus
4
aorta
4
cerebellum
4
chorion membrane
4
choroid plexus epithelial cell
4
cingulate gyrus
4
colonic mucosa
4
duodenal mucosa
4
endodermal cell
4
esophagus
4
fibroblast of breast
4
fibroblast of dermis
4
frontal cortex
4
globus pallidus
4
glomerular endothelial cell
4
glomerular visceral epithelial cell
4
glutamatergic neuron
4
kidney glomerular epithelial cell
4
limb
4
mammary epithelial cell
4
mammary gland epithelial cell
4
mesodermal cell
4
mucosa of rectum
4
muscle layer of colon
4
muscle layer of duodenum
4
myoepithelial cell of mammary gland
4
naive thymus-derived CD4-positive, alpha-beta T cell
4
neutrophil
4
peripheral blood mononuclear cell
4
putamen
4
renal cortical epithelial cell
4
skin fibroblast
4
stomach smooth muscle
4
subcutaneous adipose tissue
4
urinary bladder
4
uterus
4
vagina
3
cardiac fibroblast
3
A172
3
ACHN
3
CD1c-positive myeloid dendritic cell
3
CMK
3
Caki2
3
Daoy
3
GM04503
3
GM04504
3
GM06990
3
GM10248
3
GM10266
3
GM12864
3
GM12865
3
GM12878
3
GM23248
3
H4
3
HAP-1
3
HL-60
3
HT-29
3
HUES6
3
IMR-90
3
KBM-7
3
L1-S8
3
LHCN-M2
3
LNCAP
3
LNCaP clone FGC
3
M059J
3
MCF 10A
3
MG63
3
MM.1S
3
NAMALWA cell
3
OCI-LY7
3
PC-3
3
PC-9
3
RCC 7860
3
RPMI7951
3
RPMI8226
3
RWPE1
3
SJCRH30
3
SJSA1
Organ
3
epithelium
3
kidney
Life stage
2
unknown
Date released
1
February, 2021
1
January, 2020
1
September, 2022
Software used
1
encode-ccres
1
macs
1
r
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
Showing 3 of 3 results
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Download
FileSet
DSR691IGQ
released
Annotation file set
: Candidate regulatory elements for BSS00310 epithelial cell of proximal tubule from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR711XKR
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE epithelial cell of proximal tubule
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR184YBQ
released
Annotation file set
: Accessible chromatin annotation of kidney epithelial cell of proximal tubule from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP