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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
37
candidate regulatory elements
20
chromatin state
target gene predictions
5
accessible chromatin
3
gene expression
1
binding sites
1
histone modifications
0
variant allelic effects
Annotation Category
5
cis-regulatory elements
Annotation type Category
4
DNase-seq
1
ATAC-seq
Available data
5
bed bed3+
3
bigWig
File set status
5
released
Genome assembly (visualization)
5
hg19
3
GRCh38
Organism
5
Homo sapiens
Biosample type
5
tissue
Biosample term
23
retina
22
fibroblast
20
pigmented layer of retina
18
endothelial cell
16
macrophage
16
monocyte
13
excitatory neuron
11
smooth muscle cell
10
kidney
10
neural progenitor cell
10
pericyte cell
9
T cell
9
hepatocyte
9
pancreatic beta cell
9
pancreatic ductal cell
9
retinal pigment epithelial cell
8
EndoC_BH1
8
astrocyte
8
pancreatic acinar cell
8
pancreatic alpha cell
7
adipocyte
7
skeletal muscle fiber
6
B cell
6
SGBS preadipocytes
6
embryonic stem cell
6
endothelial cell of hepatic sinusoid
6
enterocyte
6
glutamatergic neuron
6
pancreatic delta cell
5
chondrocyte
5
erythroblast
5
heart
5
inhibitory neuron
5
islet of Langerhans
5
osteoblast
5
pancreas
5
skeletal muscle satellite cell
5
type II pneumocyte
4
basal cell
4
cortical cell of adrenal gland
4
fibroblast of cardiac tissue
4
liver
4
myofibroblast cell
4
pancreatic stellate cell
3
cardiac fibroblast
3
CD8-positive, alpha-beta T cell
3
Schwann cell
3
cardiac muscle cell
3
colon epithelial cell
3
coronary artery
3
endothelial cell of lymphatic vessel
3
gabaergic neuron
3
glomerular visceral epithelial cell
3
goblet cell
3
heart left ventricle
3
hepatic stellate cell
3
keratinocyte
3
mammary gland epithelial cell
3
mesenchymal stem cell
3
mesothelial cell
3
natural killer cell
3
pancreatic polypeptide-secreting cell
3
regulatory T cell
3
right atrium auricular region
3
skin fibroblast
3
stomach
3
tibial artery
3
tibial nerve
3
type I muscle cell
3
type I pneumocyte
3
type II muscle cell
2
Ammon's horn
2
CD4-positive helper T cell
2
HepG2
2
MIN6
2
Muller cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
Rh-4 cell
2
acute myeloid leukemia cell
2
adipose tissue
2
adipose-derived stem cell
2
aortic endothelial cell
2
blood vessel smooth muscle cell
2
bone marrow cell
2
brain
2
brain pericyte
2
capillary endothelial cell
2
caudate nucleus
2
choroid plexus epithelial cell
2
ciliated cell
2
club cell
2
differentiating adipose-derived stem cell
2
endocardial cell
2
enteric neuron
2
enteric smooth muscle cell
2
epithelial cell of esophagus
2
erythroid cell
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
frontal cortex
2
glial cell
2
globus pallidus
2
glomerular endothelial cell
2
kidney glomerular epithelial cell
2
kidney tubule cell
2
leukocyte
2
luminal epithelial cell of mammary gland
2
mast cell
2
megakaryocyte
2
memory B cell
2
mesangial cell
2
muscle of leg
2
naive t cell
2
neuron
2
occipital lobe
2
oligodendrocyte
2
oligodendrocyte precursor cell
2
omental fat pad
2
parietal cell
2
peptic cell
2
pons
2
putamen
2
renal cortical epithelial cell
2
renal pelvis
2
schwann cell
2
smooth muscle cell of the esophagus
2
spinal cord
2
spleen
2
subcutaneous adipose tissue
2
superior temporal gyrus
2
thyroid follicular cell
2
vascular associated smooth muscle cell
1
hindlimb muscle
1
786-O cell
1
A-673 cell
1
A172
1
A549
1
ACHN
1
AG04449 cell
1
AG04450 cell
1
AG08396 cell
1
AG09309 cell
1
AG09319 cell
1
AG10803 cell
1
B-Lymphocytes
1
B-lymphocyte
1
BE(2)-C
1
BJ cell
1
CD1c-positive myeloid dendritic cell
1
CD4-Positive T-Lymphocytes
1
CD4-positive, alpha-beta T cell
1
CMK
1
COLO-829 cell
1
COLO205
1
Caco-2 cell
1
Caki2
1
D341 Med cell
1
DG-75 cell
1
Daoy
1
ECC-1
1
G-401 cell
1
GM03348
1
GM04503
1
GM04504
1
GM06990
1
GM10248
1
GM10266
1
GM12864
1
GM12865
1
GM12878
1
GM13976
1
GM13977
1
GM18507
1
GM19240
1
GM20000
1
GM23248
1
GP5d
1
Glioblastoma
1
H1-hESC
1
H4
1
H7-hESC
1
HAC cell
1
HAP-1
1
HBMEC cell
1
HCT-116 cell
1
HEK293
1
HGF
1
HL-60
1
HT-29
1
HUES6
1
HUES8
1
HeLa cell
1
Hodgkin lymphoma cell line
1
HuH-7
1
HuTu-80 cell
1
IMR-90
1
Ishikawa
1
Jurkat
1
K562
1
KARPAS-422 cell
Organ
5
heart
Life stage
1
adult
1
child
1
embryonic
Date released
2
January, 2020
2
June, 2020
May, 2020
1
November, 2019
Software used
5
macs
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
annotation_type!
target gene predictions
month_released!
May, 2020
Showing 5 of 5 results
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Download
FileSet
DSR405HBQ
released
Annotation file set
: Accessible chromatin annotation for Cardiovascular Heart from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR763PMQ
released
Annotation file set
: Accessible chromatin annotation for Adipocyte Fetal Heart from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR270JSX
released
Annotation file set
: Accessible chromatin annotation of heart child from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR994QRK
released
Annotation file set
: Accessible chromatin annotation of heart adult from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR351NUN
released
Annotation file set
: Accessible chromatin annotation of heart
Lab:
AMP-T2D consortium
Project:
AMP