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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
21
chromatin state
3
gene expression
1
accessible chromatin
1
binding sites
1
histone modifications
1
target gene predictions
Annotation Category
1
cis-regulatory elements
Annotation type Category
DNase-seq
1
ATAC-seq
Available data
1
bed bed3+
1
bigWig
File set status
1
released
Genome assembly (visualization)
1
GRCh38
1
hg19
Organism
1
Homo sapiens
Biosample type
1
tissue
Biosample term
21
retina
20
pigmented layer of retina
15
monocyte
10
neural progenitor cell
8
EndoC_BH1
7
kidney
6
embryonic stem cell
6
retinal pigment epithelial cell
5
SGBS preadipocytes
5
chondrocyte
5
endothelial cell
5
hepatocyte
5
islet of Langerhans
4
adipocyte
4
endothelial cell of hepatic sinusoid
4
glutamatergic neuron
4
pancreatic beta cell
4
pancreatic ductal cell
3
liver
3
pancreatic acinar cell
3
pancreatic alpha cell
3
pancreatic stellate cell
3
smooth muscle cell
2
B cell
2
CD8-positive, alpha-beta T cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
T follicular helper cell
2
T-helper 1 cell
2
T-helper 17 cell
2
T-helper 2 cell
2
adipose tissue
adipose-derived stem cell
2
aortic endothelial cell
2
central memory CD8-positive, alpha-beta T cell
2
coronary artery
2
differentiating adipose-derived stem cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
fibroblast
2
gamma-delta T cell
2
leukocyte
2
mature natural killer cell
2
memory B cell
2
memory T cell
2
memory regulatory T cell
2
mesenchymal stem cell
2
naive B cell
2
naive regulatory T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
osteoblast
2
pancreatic delta cell
2
regulatory T cell
2
skeletal muscle fiber
2
skeletal muscle satellite cell
2
subcutaneous adipose tissue
2
type I muscle cell
2
type II muscle cell
1
HepG2
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
Schwann cell
1
T cell
1
astrocyte
1
cardiac muscle cell
1
cardiac precursors
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
excitatory neuron
1
gabaergic neuron
1
glial cell
1
glomerular visceral epithelial cell
1
heart
1
heart left ventricle
1
hippocampal neuron
1
immature natural killer cell
1
kidney distal convoluted tubule epithelial cell
1
kidney glomerular epithelial cell
1
kidney interstitial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
lower motor neuron
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
microglial cell/astrocyte
1
myeloid dendritic cell
1
natural killer cell
1
neural cell
1
neuron
1
neuron cell of Hypothalamus (neuron)
1
non-neuronal cell
1
oligodendrocyte
1
omental fat pad
1
pancreas
1
pancreatic A cell
1
pancreatic D cell
1
pancreatic PP cell
1
pancreatic endothelial cell
1
pancreatic immune cell
1
pancreatic polypeptide-secreting cell
1
plasma cell
1
plasmacytoid dendritic cell
1
preadipocyte
1
proximal epiphysis
1
proximal epiphysis of femur
1
proximal epiphysis of humerus
1
proximal epiphysis of tibia
1
proximal tubule cells with injury markers
1
renal intercalated cell
1
renal principal cell
1
right atrium auricular region
1
smooth muscle cell of the coronary artery
1
spleen
1
thoracic aorta
1
tibial artery
1
tibial nerve
1
tissue-resident macrophage
1
type B pancreatic cell
Organ
1
heart
Life stage
1
embryonic
Date released
1
November, 2019
Software used
1
macs
Lab
1
AMP-T2D consortium
Project
1
AMP
RFA
1
AMP
biosample_term_name!
adipose-derived stem cell
annotation_type_category!
DNase-seq
Showing 1 of 1 results
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Download
FileSet
DSR351NUN
released
Annotation file set
: Accessible chromatin annotation of heart
Lab:
AMP-T2D consortium
Project:
AMP