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Schema
Citing CMDGA
Clear Filters
Annotation type
39
candidate regulatory elements
21
target gene predictions
5
gene expression
4
accessible chromatin
2
variant allelic effects
1
binding sites
1
histone modifications
Annotation Category
4
cis-regulatory elements
2
Genetic variant effects
Annotation type Category
4
DNase-seq
2
snATAC-seq
Available data
6
bed bed3+
1
bigWig
File set status
6
released
Genome assembly (visualization)
12
hg19
GRCh38
Organism
6
Homo sapiens
Biosample type
4
tissue
2
primary cell
Biosample term
23
retina
20
pigmented layer of retina
8
EndoC_BH1
7
retinal pigment epithelial cell
6
SGBS preadipocytes
6
adipocyte
6
embryonic stem cell
6
endothelial cell
6
fibroblast
6
macrophage
5
B cell
5
chondrocyte
5
monocyte
5
pancreatic alpha cell
5
pancreatic beta cell
5
pancreatic delta cell
5
regulatory T cell
4
CD8-positive, alpha-beta T cell
4
T cell
4
glutamatergic neuron
4
heart
4
myofibroblast cell
4
natural killer cell
4
pancreatic ductal cell
4
skeletal muscle fiber
4
smooth muscle cell
3
T-helper 1 cell
3
adipose tissue
3
basal cell
3
enterocyte
3
glomerular visceral epithelial cell
3
hepatocyte
3
islet of Langerhans
3
memory B cell
3
mesenchymal stem cell
3
naive B cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
pancreas
3
pancreatic acinar cell
3
pancreatic polypeptide-secreting cell
3
right atrium auricular region
3
skeletal muscle myoblast
3
stomach
3
tibial artery
3
tibial nerve
2
cardiac fibroblast
2
muscle of leg
2
MIN6
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
Rh-4 cell
2
Schwann cell
2
T follicular helper cell
2
T-helper 17 cell
2
T-helper 2 cell
2
acute myeloid leukemia cell
2
adipose-derived stem cell
2
aortic endothelial cell
2
bone marrow cell
2
brain
2
brain pericyte
2
capillary endothelial cell
2
cardiac muscle cell
2
caudate nucleus
2
central memory CD8-positive, alpha-beta T cell
2
choroid plexus epithelial cell
2
coronary artery
2
differentiating adipose-derived stem cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
endothelial cell of umbilical vein
2
epithelial cell of esophagus
2
erythroid cell
2
extracellular matrix secreting cell
2
fibroblast of cardiac tissue
2
frontal cortex
2
gamma-delta T cell
2
globus pallidus
2
glomerular endothelial cell
2
goblet cell
2
heart left ventricle
2
hepatic stellate cell
2
kidney
2
kidney glomerular epithelial cell
2
leukocyte
2
liver
2
mammary gland epithelial cell
2
mature natural killer cell
2
medulla oblongata
2
memory T cell
2
memory regulatory T cell
2
midbrain
2
naive regulatory T cell
2
occipital lobe
2
osteoblast
2
pancreatic stellate cell
2
plasmacytoid dendritic cell
2
pons
2
putamen
2
renal cortical epithelial cell
2
renal pelvis
2
skeletal muscle satellite cell
2
skin fibroblast
2
spinal cord
2
superior temporal gyrus
2
type I muscle cell
2
type II muscle cell
2
type II pneumocyte
2
vascular associated smooth muscle cell
1
brain microvascular endothelial cell
1
hindlimb muscle
1
left kidney
1
omental fat pad
1
retinal pigment epithelial cell
1
786-O cell
1
A-673 cell
1
A172
1
A549
1
ACHN
1
AG04449 cell
1
AG04450 cell
1
AG08396 cell
1
AG09309 cell
1
AG09319 cell
1
AG10803 cell
1
Adipose SGBS cell line (adipocyte)
1
Ammon's horn
1
B-Lymphocytes
1
B-lymphocyte
1
BE(2)-C
1
BJ cell
1
CD1c-positive myeloid dendritic cell
1
CD4-Positive T-Lymphocytes
1
CD4-positive helper T cell
1
CMK
1
COLO-829 cell
1
COLO205
1
Caco-2 cell
1
Caki2
1
D341 Med cell
1
DG-75 cell
1
Daoy
1
ECC-1
1
G-401 cell
1
GM03348
1
GM04503
1
GM04504
1
GM06990
1
GM10248
1
GM10266
1
GM12864
1
GM12865
1
GM12878
1
GM13976
1
GM13977
1
GM18507
1
GM19240
1
GM20000
1
GM23248
1
GP5d
1
Glioblastoma
1
H1-hESC
1
H4
1
H7-hESC
1
HAC cell
1
HAP-1
1
HBMEC cell
1
HCT-116 cell
1
HEK293
1
HGF
1
HL-60
1
HT-29
1
HUES6
1
HUES8
1
HeLa cell
1
Heart fetal (cardiac muscle cell)
1
HepG2
1
Hodgkin lymphoma cell line
1
HuH-7
1
HuTu-80 cell
1
IMR-90
1
Ishikawa
1
Jurkat
1
K562
1
KARPAS-422 cell
1
KBM-7
1
Kasumi-1
1
L-1236 cell
1
L-428 cell
1
L1-S8
1
L1-S8R
1
LHCN-M2
1
LNCAP
1
Liver fetal (hepatocyte)
1
LoVo cell
1
M059J
1
MCF-7
1
MCF10A-Er-Src cell
1
MDA-MB-231 cell
1
MG63
Organ
4
heart
2
musculature of body
Life stage
1
fetal
1
unknown
Date released
2
June, 2020
2
May, 2020
1
February, 2024
1
May, 2022
Software used
4
macs
2
deltasvm
Lab
5
AMP-T2D consortium
1
Stephen Parker, UMich
Project
6
AMP
RFA
5
AMP
1
AMP2
assembly!
GRCh38
Showing 6 of 6 results
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Download
FileSet
DSR534XMQ
released
Annotation file set
: Accessible chromatin from snATAC-seq of skeletal muscle satellite cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR724QWN
released
Annotation file set
: Cell type chromatin broad peaks and bw of skeletal muscle satellite cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR405HBQ
released
Annotation file set
: Accessible chromatin annotation for Cardiovascular Heart from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR763PMQ
released
Annotation file set
: Accessible chromatin annotation for Adipocyte Fetal Heart from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR480PRT
released
Annotation file set
: Genetic variants with deltaSVM predictions in heart child DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR799HGW
released
Annotation file set
: Genetic variants with deltaSVM predictions in heart DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP