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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
4
accessible chromatin
3
candidate regulatory elements
3
chromatin state
3
target gene predictions
2
gene expression
2
variant allelic effects
1
binding sites
1
histone modifications
Annotation Category
3
cis-regulatory elements
2
Gene expression levels
Annotation type Category
3
ChIP-seq
2
RNA-seq
Available data
3
bed bed9
2
tsv
1
bigBed bed9
File set status
4
released
1
revoked
Genome assembly (visualization)
3
GRCh38
3
hg19
Organism
5
Homo sapiens
Biosample type
5
tissue
Biosample term
18
A549
17
epithelial cell of proximal tubule
15
glomerular endothelial cell
15
monocyte
14
hepatocyte
14
islet of Langerhans
13
common myeloid progenitor, CD34-positive
11
cardiomyocytes
11
hematopoietic multipotent progenitor cell
10
B cell
10
T-helper 1 cell
10
T-helper 17 cell
10
endothelial cell
10
kidney
10
regulatory T cell
9
CD4-positive, alpha-beta memory T cell
9
adipose tissue
9
extended pluripotent stem (EPS) cells
9
induced pluripotent stem cell
9
progenitor cell of endocrine pancreas
8
EndoC_BH1
8
H1-hESC
8
adipocyte
8
liver
7
CD8-positive, alpha-beta memory T cell
7
K562
7
adrenal gland
7
heart left ventricle
7
kidney loop of Henle thin ascending limb epithelial cell
7
mature neutrophil
7
neural progenitor cell
7
stomach
6
T-helper 2 cell
6
body of pancreas
6
embryonic stem cell
6
glomerular visceral epithelial cell
6
kidney interstitial cell
6
mononuclear cell
6
pancreatic ductal cell
6
spleen
6
subcutaneous adipose tissue
6
temporal lobe
6
tibial nerve
5
CD14-positive, CD16-negative classical monocyte
5
MCF-7
5
alternatively activated macrophage
5
caudate nucleus
5
endothelial cell of umbilical vein
5
heart
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
left cardiac atrium
5
mesangial cell
5
natural killer cell
5
sigmoid colon
4
CD14-positive monocyte
4
CD8-positive, alpha-beta T cell
4
T cell
4
angular gyrus
4
aorta
4
ascending aorta
4
bone tissue
4
cardiomyocytes (cardiac muscle cell)
4
cerebellum
4
coronary artery
4
endocrine pancreas
4
endothelial cell of hepatic sinusoid
4
fibroblast of lung
4
foreskin keratinocyte
4
frontal cortex
4
gamma-delta T cell
4
gastrocnemius medialis
4
heart right ventricle
4
inflammatory macrophage
4
kidney connecting tubule epithelial cell
4
kidney distal convoluted tubule epithelial cell
4
layer of hippocampus
4
nephron progenitor
4
omental fat pad
4
ovary
4
psoas muscle
4
right atrium auricular region
4
skeletal muscle myoblast
4
skeletal muscle satellite cell
4
skeletal muscle tissue
4
substantia nigra
4
thyroid gland
4
tibial artery
4
transverse colon
3
Adaptive / Maladaptive / Repairing Fibroblast
3
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
3
Afferent / Efferent Arteriole Endothelial Cell
3
B Cell
3
CD4-positive, alpha-beta T cell
3
Classical Dendritic Cell
3
Connecting Tubule Cell
3
Connecting Tubule Intercalated Cell Type A
3
Connecting Tubule Principal Cell
3
Cortical Thick Ascending Limb Cell
3
Cycling Endothelial Cell
3
Cycling Epithelial Cell
3
Cycling Mononuclear Phagocyte
3
Cycling T Cell
3
Cytotoxic T Cell
3
Degenerative Connecting Tubule Cell
3
Degenerative Connecting Tubule Cell / Principal Cell
3
Degenerative Cortical Thick Ascending Limb Cell
3
Degenerative Distal Convoluted Tubule Cell
3
Degenerative Intercalated Cell Type A
3
Degenerative Peritubular Capillary Endothelial Cell
3
Degenerative Principal Cell
3
Degenerative Proximal Tubule Epithelial Cell
3
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
3
Degenerative Vascular Smooth Muscle Cell
3
Descending Thin Limb Cell Type 1
3
Distal Convoluted Tubule Cell Type 1
3
Fibroblast
3
Glomerular Capillary Endothelial Cell
3
HeLa-S3
3
Intercalated Cell Type A
3
Intercalated Cell Type B
3
Lymphatic Endothelial Cell
3
M2 Macrophage
3
Mast Cell
3
Medullary Thick Ascending Limb Cell
3
Mesangial Cell
3
Monocyte
3
Monocyte-derived Cell
3
Myofibroblast
3
Natural Killer T Cell
3
Natural Killer T Cell Type 1
3
Natural Killer T Cell Type 2
3
Non-Classical Monocyte
3
Parietal Epithelial Cell
3
Peritubular Capillary Endothelial Cell
3
Peyer's patch
3
Plasma Cell
3
Plasmacytoid Dendritic Cell
3
Podocyte
3
Principal Cell
3
Proximal Tubule Epithelial Cell Segment 1 and 2
3
Proximal Tubule Epithelial Cell Segment 3
3
Regulatory T Cell
3
Renin-positive Juxtaglomerular Granular Cell
3
S-shaped body
3
T Cell
3
Transitional Principal-Intercalated Cell
3
Vascular Smooth Muscle Cell / Pericyte
3
adult endothelial progenitor cell
3
brain
3
central memory CD8-positive, alpha-beta T cell
3
cingulate gyrus
3
colonic mucosa
3
duodenal mucosa
3
effector memory CD8-positive, alpha-beta T cell
3
endometrium adenocarcinoma
3
fibroblast of dermis
3
hepatocyte(AFP)
3
immortal human breast epithelial cell line cell
3
keratinocyte
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
kidney tubule cell
3
lung
3
mammary gland epithelial cell
3
memory B cell
3
mesenchymal stem cell
3
mucosa of rectum
3
naive T cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
osteoblast
3
pancreas
3
pancreatic acinar cell
3
pancreatic alpha cell
3
pancreatic beta cell
3
pancreatic delta cell
3
right cardiac atrium
3
small intestine
3
stomach smooth muscle
3
testis
3
thoracic aorta
3
upper lobe of left lung
3
vagina
2
22Rv1
2
Ammon's horn
2
Brodmann (1909) area 46
2
ESC derived cell line
2
GM12878
2
HepG2
2
KARPAS-422 cell
2
Kupffer cell
2
LNCaP clone FGC
2
NAMALWA cell
2
SK-N-DZ
Organ
5
heart
Life stage
embryonic
2
adult
2
fetal
1
child
Date released
2
September, 2022
1
February, 2020
1
February, 2021
1
May, 2020
Software used
3
chromhmm
2
r
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
relevant_life_stage!
embryonic
Showing 5 of 5 results
table-tab-icon
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Download
FileSet
DSR184ZIQ
released
Annotation file set
: Chromatin states for BSS00516 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR821WIY
released
Annotation file set
: Chromatin states for BSS00514 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR384FIT
released
Annotation file set
: Gene expression of heart (atria and ventricle)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR670YAY
released
Annotation file set
: Gene expression levels of Heart fetal from RNA-seq (GSE63634) + RNA-seq (ENCODE) + RNA-seq (GSE106690)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR032VAF
revoked
Annotation file set
: ChromHMM 5-state model for heart fetal from 5 GSE63634 ChIP-seq data (very large promoter regions, revoked)
Lab:
AMP-T2D consortium
Project:
AMP